Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET5Gv20264100 [ AET5Gv20264100] |
5D | 133105129 | 133108548 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET5Gv20264100.10 AET5Gv20264100.10 |
Low | No | 1351 | OG0003759 | Get ORF Coding potential... Type: noncoding Potential: -0.549 Folding energies... MFEI: -25.996 AMFE: -0.665 GC content %: 39.082 | |
Atauschii_AET5Gv20264100.11 AET5Gv20264100.11 |
Low | No | 1397 | OG0003759 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -25.920 AMFE: -0.660 GC content %: 39.298 | |
Atauschii_AET5Gv20264100.4 AET5Gv20264100.4 |
Low | No | 1527 | OG0003759 | Get ORF Coding potential... Type: noncoding Potential: -0.253 Folding energies... MFEI: -25.357 AMFE: -0.645 GC content %: 39.293 | |
Atauschii_AET5Gv20264100.5 AET5Gv20264100.5 |
Low | No | 716 | OG0003759 | Get ORF Coding potential... Type: noncoding Potential: -0.305 Folding energies... MFEI: -27.095 AMFE: -0.638 GC content %: 42.458 | |
Atauschii_AET5Gv20264100.6 AET5Gv20264100.6 |
Low | No | 558 | OG0003759 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -26.649 AMFE: -0.604 GC content %: 44.086 | |
Atauschii_AET5Gv20264100.7 AET5Gv20264100.7 |
Low | No | 632 | OG0003759 | Get ORF Coding potential... Type: noncoding Potential: -0.275 Folding energies... MFEI: -27.009 AMFE: -0.621 GC content %: 43.513 | |
Atauschii_AET5Gv20264100.8 AET5Gv20264100.8 |
Low | No | 1372 | OG0003759 | Get ORF Coding potential... Type: noncoding Potential: -0.261 Folding energies... MFEI: -25.671 AMFE: -0.644 GC content %: 39.869 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET5Gv20264100.8 | SwissProt | 2021-04-01 | Q8T295 | 2.74e-14 |
Atauschii_AET5Gv20264100.11 | SwissProt | 2021-04-01 | Q9SSD2 | 1.37e-9 |
Atauschii_AET5Gv20264100.10 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
Atauschii_AET5Gv20264100.4 | SwissProt | 2021-04-01 | Q8T295 | 9.72e-14 |
Atauschii_AET5Gv20264100.11 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
Atauschii_AET5Gv20264100.5 | SwissProt | 2021-04-01 | Q9SSD2 | 3.75e-6 |
Atauschii_AET5Gv20264100.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
Atauschii_AET5Gv20264100.6 | SwissProt | 2021-04-01 | Q9SSD2 | 3.62e-10 |
Atauschii_AET5Gv20264100.8 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
Atauschii_AET5Gv20264100.7 | SwissProt | 2021-04-01 | Q9SSD2 | 2.04e-6 |
... further results