Atauschii AET5Gv20267300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20267300 [ AET5Gv20267300] |
5D | 134580837 | 134585495 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20267300.10 AET5Gv20267300.10 |
High | No | 2236 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -0.725 Folding energies... MFEI: -29.987 AMFE: -0.557 GC content %: 53.846 | |
| Atauschii_AET5Gv20267300.11 AET5Gv20267300.11 |
High | No | 1662 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -28.827 AMFE: -0.635 GC content %: 45.367 | |
| Atauschii_AET5Gv20267300.12 AET5Gv20267300.12 |
High | No | 1562 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -29.488 AMFE: -0.634 GC content %: 46.543 | |
| Atauschii_AET5Gv20267300.13 AET5Gv20267300.13 |
High | No | 2167 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -0.721 Folding energies... MFEI: -29.815 AMFE: -0.549 GC content %: 54.269 | |
| Atauschii_AET5Gv20267300.14 AET5Gv20267300.14 |
High | No | 1894 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -29.583 AMFE: -0.627 GC content %: 47.202 | |
| Atauschii_AET5Gv20267300.15 AET5Gv20267300.15 |
High | No | 1804 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -29.568 AMFE: -0.613 GC content %: 48.226 | |
| Atauschii_AET5Gv20267300.16 AET5Gv20267300.16 |
High | No | 2343 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -0.731 Folding energies... MFEI: -29.834 AMFE: -0.566 GC content %: 52.710 | |
| Atauschii_AET5Gv20267300.17 AET5Gv20267300.17 |
High | No | 2874 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -0.757 Folding energies... MFEI: -28.852 AMFE: -0.582 GC content %: 49.582 | |
| Atauschii_AET5Gv20267300.19 AET5Gv20267300.19 |
High | No | 2274 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -0.727 Folding energies... MFEI: -29.560 AMFE: -0.557 GC content %: 53.078 | |
| Atauschii_AET5Gv20267300.2 AET5Gv20267300.2 |
High | No | 2379 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -0.733 Folding energies... MFEI: -29.088 AMFE: -0.556 GC content %: 52.291 | |
| Atauschii_AET5Gv20267300.20 AET5Gv20267300.20 |
High | No | 2344 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -0.712 Folding energies... MFEI: -28.306 AMFE: -0.559 GC content %: 50.683 | |
| Atauschii_AET5Gv20267300.21 AET5Gv20267300.21 |
High | No | 787 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -28.183 AMFE: -0.553 GC content %: 50.953 | |
| Atauschii_AET5Gv20267300.3 AET5Gv20267300.3 |
High | No | 2419 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -0.735 Folding energies... MFEI: -29.252 AMFE: -0.560 GC content %: 52.253 | |
| Atauschii_AET5Gv20267300.4 AET5Gv20267300.4 |
High | No | 2424 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -0.735 Folding energies... MFEI: -29.356 AMFE: -0.562 GC content %: 52.228 | |
| Atauschii_AET5Gv20267300.5 AET5Gv20267300.5 |
Low | No | 1028 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -1.265 Folding energies... MFEI: -26.916 AMFE: -0.611 GC content %: 44.066 | |
| Atauschii_AET5Gv20267300.6 AET5Gv20267300.6 |
High | No | 1931 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -29.394 AMFE: -0.622 GC content %: 47.281 | |
| Atauschii_AET5Gv20267300.7 AET5Gv20267300.7 |
High | No | 1765 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -29.626 AMFE: -0.618 GC content %: 47.932 | |
| Atauschii_AET5Gv20267300.8 AET5Gv20267300.8 |
High | No | 1811 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -29.525 AMFE: -0.617 GC content %: 47.874 | |
| Atauschii_AET5Gv20267300.9 AET5Gv20267300.9 |
High | No | 2336 | OG0000561 | Get ORF Coding potential... Type: noncoding Potential: -0.730 Folding energies... MFEI: -29.491 AMFE: -0.558 GC content %: 52.825 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20267300.5 | SwissProt | 2021-04-01 | Q7Y1X1 | 1.0e-3 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
