GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv20272100 [ AET5Gv20272100]	5D	138850491	138856159	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv20272100.13 AET5Gv20272100.13	High	No	719	OG0076222		Get ORF Coding potential... Type: noncoding Potential: -1.109 Folding energies... MFEI: -25.772 AMFE: -0.679 GC content %: 37.969
Atauschii_AET5Gv20272100.8 AET5Gv20272100.8	High	No	475	OG0076223		Get ORF Coding potential... Type: noncoding Potential: -1.332 Folding energies... MFEI: -27.537 AMFE: -0.569 GC content %: 48.421
Atauschii_AET5Gv20272100.9 AET5Gv20272100.9	High	No	557	OG0076224		Get ORF Coding potential... Type: noncoding Potential: -1.352 Folding energies... MFEI: -28.995 AMFE: -0.540 GC content %: 53.680

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).