Atauschii AET5Gv20286900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20286900 [ AET5Gv20286900] |
5D | 158461152 | 158468511 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20286900.10 AET5Gv20286900.10 |
High | No | 781 | OG0001582 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -31.767 AMFE: -0.656 GC content %: 48.399 | |
| Atauschii_AET5Gv20286900.11 AET5Gv20286900.11 |
High | No | 830 | OG0001582 | Get ORF Coding potential... Type: noncoding Potential: -1.304 Folding energies... MFEI: -29.639 AMFE: -0.665 GC content %: 44.578 | |
| Atauschii_AET5Gv20286900.12 AET5Gv20286900.12 |
High | No | 862 | OG0001582 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -32.239 AMFE: -0.693 GC content %: 46.520 | |
| Atauschii_AET5Gv20286900.13 AET5Gv20286900.13 |
High | No | 817 | OG0001582 | Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -28.960 AMFE: -0.645 GC content %: 44.920 | |
| Atauschii_AET5Gv20286900.14 AET5Gv20286900.14 |
High | No | 1903 | OG0001582 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -25.885 AMFE: -0.700 GC content %: 36.994 | |
| Atauschii_AET5Gv20286900.15 AET5Gv20286900.15 |
High | No | 2052 | OG0001582 | Get ORF Coding potential... Type: noncoding Potential: -1.253 Folding energies... MFEI: -25.906 AMFE: -0.703 GC content %: 36.842 | |
| Atauschii_AET5Gv20286900.2 AET5Gv20286900.2 |
Low | No | 2733 | OG0001582 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -28.460 AMFE: -0.647 GC content %: 43.981 | |
| Atauschii_AET5Gv20286900.4 AET5Gv20286900.4 |
High | No | 1239 | OG0001582 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -25.609 AMFE: -0.602 GC content %: 42.534 | |
| Atauschii_AET5Gv20286900.7 AET5Gv20286900.7 |
High | No | 1642 | OG0001582 | Get ORF Coding potential... Type: noncoding Potential: -1.124 Folding energies... MFEI: -30.219 AMFE: -0.640 GC content %: 47.199 | |
| Atauschii_AET5Gv20286900.8 AET5Gv20286900.8 |
High | No | 1046 | OG0001582 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -31.663 AMFE: -0.627 GC content %: 50.478 | |
| Atauschii_AET5Gv20286900.9 AET5Gv20286900.9 |
High | No | 770 | OG0001582 | Get ORF Coding potential... Type: noncoding Potential: -1.370 Folding energies... MFEI: -29.169 AMFE: -0.634 GC content %: 45.974 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20286900.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/MULE-MuDR |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
