Atauschii AET5Gv20288300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20288300 [ AET5Gv20288300] |
5D | 158979517 | 158982216 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20288300.1 AET5Gv20288300.1 |
High | No | 2042 | OG0006982 | Get ORF Coding potential... Type: noncoding Potential: -1.319 Folding energies... MFEI: -27.488 AMFE: -0.645 GC content %: 42.605 | |
| Atauschii_AET5Gv20288300.10 AET5Gv20288300.10 |
High | No | 1497 | OG0006982 | Get ORF Coding potential... Type: noncoding Potential: -1.315 Folding energies... MFEI: -28.003 AMFE: -0.643 GC content %: 43.554 | |
| Atauschii_AET5Gv20288300.12 AET5Gv20288300.12 |
High | No | 852 | OG0006982 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -28.087 AMFE: -0.574 GC content %: 48.944 | |
| Atauschii_AET5Gv20288300.13 AET5Gv20288300.13 |
High | No | 1026 | OG0006982 | Get ORF Coding potential... Type: noncoding Potential: -1.286 Folding energies... MFEI: -28.967 AMFE: -0.610 GC content %: 47.466 | |
| Atauschii_AET5Gv20288300.14 AET5Gv20288300.14 |
High | No | 298 | OG0076259 | Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -23.859 AMFE: -0.635 GC content %: 37.584 | |
| Atauschii_AET5Gv20288300.8 AET5Gv20288300.8 |
High | No | 1452 | OG0006982 | Get ORF Coding potential... Type: noncoding Potential: -1.301 Folding energies... MFEI: -27.176 AMFE: -0.608 GC content %: 44.697 | |
| Atauschii_AET5Gv20288300.9 AET5Gv20288300.9 |
High | No | 1242 | OG0016460 | Get ORF Coding potential... Type: noncoding Potential: -1.309 Folding energies... MFEI: -27.617 AMFE: -0.619 GC content %: 44.605 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
