Atauschii AET5Gv20292100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20292100 [ AET5Gv20292100] |
5D | 162257231 | 162262189 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20292100.1 AET5Gv20292100.1 |
Low | No | 2549 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.401 Folding energies... MFEI: -24.993 AMFE: -0.659 GC content %: 37.936 | |
| Atauschii_AET5Gv20292100.10 AET5Gv20292100.10 |
Low | No | 1485 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.173 Folding energies... MFEI: -29.037 AMFE: -0.674 GC content %: 43.098 | |
| Atauschii_AET5Gv20292100.11 AET5Gv20292100.11 |
Low | No | 1803 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.210 Folding energies... MFEI: -28.963 AMFE: -0.686 GC content %: 42.207 | |
| Atauschii_AET5Gv20292100.13 AET5Gv20292100.13 |
Low | No | 1195 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.182 Folding energies... MFEI: -30.017 AMFE: -0.672 GC content %: 44.686 | |
| Atauschii_AET5Gv20292100.14 AET5Gv20292100.14 |
Low | No | 1208 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.170 Folding energies... MFEI: -30.017 AMFE: -0.669 GC content %: 44.868 | |
| Atauschii_AET5Gv20292100.15 AET5Gv20292100.15 |
Low | No | 2107 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.148 Folding energies... MFEI: -29.032 AMFE: -0.690 GC content %: 42.050 | |
| Atauschii_AET5Gv20292100.16 AET5Gv20292100.16 |
Low | No | 1430 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.273 Folding energies... MFEI: -28.755 AMFE: -0.664 GC content %: 43.287 | |
| Atauschii_AET5Gv20292100.17 AET5Gv20292100.17 |
Low | No | 2379 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.250 Folding energies... MFEI: -27.739 AMFE: -0.685 GC content %: 40.479 | |
| Atauschii_AET5Gv20292100.18 AET5Gv20292100.18 |
Low | No | 1054 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.127 Folding energies... MFEI: -29.772 AMFE: -0.671 GC content %: 44.402 | |
| Atauschii_AET5Gv20292100.2 AET5Gv20292100.2 |
Low | No | 2126 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.386 Folding energies... MFEI: -24.897 AMFE: -0.645 GC content %: 38.617 | |
| Atauschii_AET5Gv20292100.20 AET5Gv20292100.20 |
Low | No | 1386 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.223 Folding energies... MFEI: -29.545 AMFE: -0.669 GC content %: 44.156 | |
| Atauschii_AET5Gv20292100.21 AET5Gv20292100.21 |
Low | No | 1184 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.125 Folding energies... MFEI: -29.198 AMFE: -0.671 GC content %: 43.497 | |
| Atauschii_AET5Gv20292100.23 AET5Gv20292100.23 |
Low | No | 2258 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.101 Folding energies... MFEI: -30.257 AMFE: -0.676 GC content %: 44.774 | |
| Atauschii_AET5Gv20292100.24 AET5Gv20292100.24 |
Low | No | 1687 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.212 Folding energies... MFEI: -29.235 AMFE: -0.675 GC content %: 43.331 | |
| Atauschii_AET5Gv20292100.26 AET5Gv20292100.26 |
Low | No | 1531 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.174 Folding energies... MFEI: -28.700 AMFE: -0.677 GC content %: 42.391 | |
| Atauschii_AET5Gv20292100.27 AET5Gv20292100.27 |
Low | No | 2547 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.251 Folding energies... MFEI: -27.189 AMFE: -0.673 GC content %: 40.400 | |
| Atauschii_AET5Gv20292100.28 AET5Gv20292100.28 |
Low | No | 1419 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.113 Folding energies... MFEI: -28.992 AMFE: -0.680 GC content %: 42.636 | |
| Atauschii_AET5Gv20292100.29 AET5Gv20292100.29 |
Low | No | 1010 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.051 Folding energies... MFEI: -30.376 AMFE: -0.680 GC content %: 44.653 | |
| Atauschii_AET5Gv20292100.30 AET5Gv20292100.30 |
Low | No | 952 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.289 Folding energies... MFEI: -31.702 AMFE: -0.705 GC content %: 44.958 | |
| Atauschii_AET5Gv20292100.31 AET5Gv20292100.31 |
High | No | 854 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -30.656 AMFE: -0.680 GC content %: 45.082 | |
| Atauschii_AET5Gv20292100.32 AET5Gv20292100.32 |
High | No | 601 | OG0076263 | Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -29.884 AMFE: -0.660 GC content %: 45.258 | |
| Atauschii_AET5Gv20292100.33 AET5Gv20292100.33 |
Low | No | 1659 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -27.595 AMFE: -0.689 GC content %: 40.024 | |
| Atauschii_AET5Gv20292100.34 AET5Gv20292100.34 |
High | No | 952 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -29.527 AMFE: -0.692 GC content %: 42.647 | |
| Atauschii_AET5Gv20292100.5 AET5Gv20292100.5 |
Low | No | 1897 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.226 Folding energies... MFEI: -28.271 AMFE: -0.686 GC content %: 41.223 | |
| Atauschii_AET5Gv20292100.7 AET5Gv20292100.7 |
Low | No | 1903 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.233 Folding energies... MFEI: -28.502 AMFE: -0.688 GC content %: 41.408 | |
| Atauschii_AET5Gv20292100.8 AET5Gv20292100.8 |
Low | No | 765 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.183 Folding energies... MFEI: -25.451 AMFE: -0.605 GC content %: 42.092 | |
| Atauschii_AET5Gv20292100.9 AET5Gv20292100.9 |
Low | No | 2037 | OG0000275 | Get ORF Coding potential... Type: noncoding Potential: -0.154 Folding energies... MFEI: -29.244 AMFE: -0.689 GC content %: 42.464 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20292100.23 | SwissProt | 2021-04-01 | Q9FPR3 | 4.8e-15 |
| Atauschii_AET5Gv20292100.17 | SwissProt | 2021-04-01 | Q9FPR3 | 5.27e-15 |
| Atauschii_AET5Gv20292100.9 | SwissProt | 2021-04-01 | Q9FPR3 | 1.3e-14 |
| Atauschii_AET5Gv20292100.11 | SwissProt | 2021-04-01 | Q9FPR3 | 2.99e-15 |
| Atauschii_AET5Gv20292100.30 | SwissProt | 2021-04-01 | Q9FPR3 | 9.03e-13 |
| Atauschii_AET5Gv20292100.24 | SwissProt | 2021-04-01 | Q9FPR3 | 2.55e-15 |
| Atauschii_AET5Gv20292100.18 | SwissProt | 2021-04-01 | Q9FPR3 | 4.28e-16 |
| Atauschii_AET5Gv20292100.10 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv20292100.13 | SwissProt | 2021-04-01 | Q9FPR3 | 7.71e-16 |
| Atauschii_AET5Gv20292100.33 | SwissProt | 2021-04-01 | Q9AUE0 | 1.86e-4 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
