Atauschii AET5Gv20304700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20304700 [ AET5Gv20304700] |
5D | 176449391 | 176453286 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20304700.1 AET5Gv20304700.1 |
High | No | 958 | OG0000780 | Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -24.541 AMFE: -0.576 GC content %: 42.589 | |
| Atauschii_AET5Gv20304700.11 AET5Gv20304700.11 |
Low | No | 1001 | OG0000780 | Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -30.589 AMFE: -0.639 GC content %: 47.852 | |
| Atauschii_AET5Gv20304700.12 AET5Gv20304700.12 |
Low | No | 1004 | OG0000780 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -30.667 AMFE: -0.640 GC content %: 47.908 | |
| Atauschii_AET5Gv20304700.13 AET5Gv20304700.13 |
High | No | 913 | OG0000780 | Get ORF Coding potential... Type: noncoding Potential: -0.869 Folding energies... MFEI: -31.062 AMFE: -0.636 GC content %: 48.850 | |
| Atauschii_AET5Gv20304700.2 AET5Gv20304700.2 |
High | No | 1168 | OG0000780 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -29.914 AMFE: -0.639 GC content %: 46.832 | |
| Atauschii_AET5Gv20304700.3 AET5Gv20304700.3 |
High | No | 510 | OG0000780 | Get ORF Coding potential... Type: noncoding Potential: -1.395 Folding energies... MFEI: -21.392 AMFE: -0.616 GC content %: 34.706 | |
| Atauschii_AET5Gv20304700.4 AET5Gv20304700.4 |
High | No | 1030 | OG0000780 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -30.670 AMFE: -0.642 GC content %: 47.767 | |
| Atauschii_AET5Gv20304700.7 AET5Gv20304700.7 |
High | No | 678 | OG0000780 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -25.398 AMFE: -0.598 GC content %: 42.478 | |
| Atauschii_AET5Gv20304700.8 AET5Gv20304700.8 |
Low | No | 939 | OG0000780 | Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -30.149 AMFE: -0.649 GC content %: 46.432 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20304700.11 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao | |
| Atauschii_AET5Gv20304700.12 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao | |
| Atauschii_AET5Gv20304700.8 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
