Atauschii AET5Gv20321900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20321900 [ AET5Gv20321900] |
5D | 199710361 | 199714517 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20321900.1 AET5Gv20321900.1 |
Low | No | 2869 | OG0003763 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -28.397 AMFE: -0.695 GC content %: 40.885 | |
| Atauschii_AET5Gv20321900.2 AET5Gv20321900.2 |
Low | No | 917 | OG0004770 | Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -28.419 AMFE: -0.660 GC content %: 43.075 | |
| Atauschii_AET5Gv20321900.3 AET5Gv20321900.3 |
Low | No | 1031 | OG0004770 | Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -28.545 AMFE: -0.670 GC content %: 42.580 | |
| Atauschii_AET5Gv20321900.4 AET5Gv20321900.4 |
Low | No | 1190 | OG0003763 | Get ORF Coding potential... Type: noncoding Potential: -0.964 Folding energies... MFEI: -28.639 AMFE: -0.687 GC content %: 41.681 | |
| Atauschii_AET5Gv20321900.5 AET5Gv20321900.5 |
Low | No | 964 | OG0003763 | Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -28.693 AMFE: -0.659 GC content %: 43.568 | |
| Atauschii_AET5Gv20321900.6 AET5Gv20321900.6 |
Low | No | 1459 | OG0003763 | Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -29.877 AMFE: -0.672 GC content %: 44.483 | |
| Atauschii_AET5Gv20321900.7 AET5Gv20321900.7 |
Low | No | 2328 | OG0003763 | Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -27.706 AMFE: -0.647 GC content %: 42.826 | |
| Atauschii_AET5Gv20321900.8 AET5Gv20321900.8 |
Low | No | 423 | OG0004770 | Get ORF Coding potential... Type: noncoding Potential: -0.740 Folding energies... MFEI: -26.147 AMFE: -0.576 GC content %: 45.390 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20321900.6 | SwissProt | 2021-04-01 | P56277 | 1.08e-5 |
| Atauschii_AET5Gv20321900.4 | RepBase (RepeatMasker) | 2014-01-31 | LINE/CR1; RC/Helitron | |
| Atauschii_AET5Gv20321900.7 | SwissProt | 2021-04-01 | P56277 | 1.94e-5 |
| Atauschii_AET5Gv20321900.2 | SwissProt | 2021-04-01 | P56277 | 1.51e-5 |
| Atauschii_AET5Gv20321900.5 | RepBase (RepeatMasker) | 2014-01-31 | LINE/CR1; RC/Helitron | |
| Atauschii_AET5Gv20321900.8 | SwissProt | 2021-04-01 | P56277 | 5.25e-6 |
| Atauschii_AET5Gv20321900.3 | SwissProt | 2021-04-01 | P56277 | 1.72e-5 |
| Atauschii_AET5Gv20321900.6 | RepBase (RepeatMasker) | 2014-01-31 | LINE/CR1; RC/Helitron | |
| Atauschii_AET5Gv20321900.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE/CR1; RC/Helitron | |
| Atauschii_AET5Gv20321900.4 | SwissProt | 2021-04-01 | P56277 | 2.01e-5 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
