Atauschii AET5Gv20330000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20330000 [ AET5Gv20330000] |
5D | 208042955 | 208054746 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20330000.1 AET5Gv20330000.1 |
High | No | 3532 | OG0000697 | Get ORF Coding potential... Type: noncoding Potential: -0.983 Folding energies... MFEI: -24.649 AMFE: -0.629 GC content %: 39.213 | |
| Atauschii_AET5Gv20330000.13 AET5Gv20330000.13 |
High | No | 332 | OG0000697 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -23.554 AMFE: -0.563 GC content %: 41.867 | |
| Atauschii_AET5Gv20330000.14 AET5Gv20330000.14 |
High | No | 1213 | OG0000697 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -30.272 AMFE: -0.570 GC content %: 53.092 | |
| Atauschii_AET5Gv20330000.15 AET5Gv20330000.15 |
High | No | 2933 | OG0000697 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -26.215 AMFE: -0.597 GC content %: 43.948 | |
| Atauschii_AET5Gv20330000.16 AET5Gv20330000.16 |
High | No | 1246 | OG0000697 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -30.112 AMFE: -0.559 GC content %: 53.852 | |
| Atauschii_AET5Gv20330000.17 AET5Gv20330000.17 |
High | No | 1047 | OG0000697 | Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -29.427 AMFE: -0.547 GC content %: 53.773 | |
| Atauschii_AET5Gv20330000.18 AET5Gv20330000.18 |
High | No | 817 | OG0000697 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -29.082 AMFE: -0.634 GC content %: 45.900 | |
| Atauschii_AET5Gv20330000.19 AET5Gv20330000.19 |
High | No | 987 | OG0000697 | Get ORF Coding potential... Type: noncoding Potential: -1.152 Folding energies... MFEI: -29.656 AMFE: -0.580 GC content %: 51.165 | |
| Atauschii_AET5Gv20330000.2 AET5Gv20330000.2 |
High | No | 2714 | OG0000697 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -25.217 AMFE: -0.632 GC content %: 39.904 | |
| Atauschii_AET5Gv20330000.20 AET5Gv20330000.20 |
High | No | 1153 | OG0000697 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -21.440 AMFE: -0.597 GC content %: 35.906 | |
| Atauschii_AET5Gv20330000.21 AET5Gv20330000.21 |
High | No | 1640 | OG0000697 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -25.305 AMFE: -0.547 GC content %: 46.280 | |
| Atauschii_AET5Gv20330000.22 AET5Gv20330000.22 |
High | No | 715 | OG0000697 | Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -21.175 AMFE: -0.576 GC content %: 36.783 | |
| Atauschii_AET5Gv20330000.3 AET5Gv20330000.3 |
High | No | 3301 | OG0000697 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -24.920 AMFE: -0.587 GC content %: 42.472 | |
| Atauschii_AET5Gv20330000.5 AET5Gv20330000.5 |
High | No | 2141 | OG0000697 | Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -24.909 AMFE: -0.639 GC content %: 39.000 | |
| Atauschii_AET5Gv20330000.6 AET5Gv20330000.6 |
High | No | 3463 | OG0000697 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -24.704 AMFE: -0.630 GC content %: 39.243 | |
| Atauschii_AET5Gv20330000.7 AET5Gv20330000.7 |
High | No | 875 | OG0000697 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -30.206 AMFE: -0.603 GC content %: 50.057 | |
| Atauschii_AET5Gv20330000.8 AET5Gv20330000.8 |
High | No | 3705 | OG0000697 | Get ORF Coding potential... Type: noncoding Potential: -0.929 Folding energies... MFEI: -26.286 AMFE: -0.566 GC content %: 46.478 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
