GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv20343900 [ AET5Gv20343900]	5D	220367884	220369602	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv20343900.1 AET5Gv20343900.1	High	No	877	OG0006988		Get ORF Coding potential... Type: noncoding Potential: -0.418 Folding energies... MFEI: -38.540 AMFE: -0.695 GC content %: 55.416
Atauschii_AET5Gv20343900.2 AET5Gv20343900.2	High	No	1018	OG0006988		Get ORF Coding potential... Type: noncoding Potential: -0.457 Folding energies... MFEI: -37.819 AMFE: -0.689 GC content %: 54.912
Atauschii_AET5Gv20343900.3 AET5Gv20343900.3	High	No	1019	OG0006988		Get ORF Coding potential... Type: noncoding Potential: -0.457 Folding energies... MFEI: -39.627 AMFE: -0.708 GC content %: 55.937
Atauschii_AET5Gv20343900.4 AET5Gv20343900.4	High	No	1517	OG0006988		Get ORF Coding potential... Type: noncoding Potential: -0.544 Folding energies... MFEI: -35.201 AMFE: -0.694 GC content %: 50.758
Atauschii_AET5Gv20343900.5 AET5Gv20343900.5	High	No	374	OG0076335		Get ORF Coding potential... Type: noncoding Potential: -0.195 Folding energies... MFEI: -44.626 AMFE: -0.678 GC content %: 65.775

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).