Atauschii AET5Gv20361100
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20361100 [ AET5Gv20361100] |
5D | 234724401 | 235021762 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20361100.1 AET5Gv20361100.1 |
Low | No | 726 | OG0004772 | Get ORF Coding potential... Type: coding Potential: 3.637 Folding energies... MFEI: -27.466 AMFE: -0.635 GC content %: 43.251 | |
| Atauschii_AET5Gv20361100.10 AET5Gv20361100.10 |
High | No | 1081 | OG0004772 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -26.947 AMFE: -0.639 GC content %: 42.183 | |
| Atauschii_AET5Gv20361100.2 AET5Gv20361100.2 |
Low | No | 1678 | OG0004772 | Get ORF Coding potential... Type: coding Potential: 3.275 Folding energies... MFEI: -25.089 AMFE: -0.632 GC content %: 39.690 | |
| Atauschii_AET5Gv20361100.20 AET5Gv20361100.20 |
Low | No | 2217 | OG0010053 | Get ORF Coding potential... Type: noncoding Potential: -0.788 Folding energies... MFEI: -28.845 AMFE: -0.659 GC content %: 43.753 | |
| Atauschii_AET5Gv20361100.23 AET5Gv20361100.23 |
High | No | 790 | OG0010053 | Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -31.481 AMFE: -0.619 GC content %: 50.886 | |
| Atauschii_AET5Gv20361100.24 AET5Gv20361100.24 |
Low | No | 803 | OG0010053 | Get ORF Coding potential... Type: noncoding Potential: -0.980 Folding energies... MFEI: -35.878 AMFE: -0.650 GC content %: 55.168 | |
| Atauschii_AET5Gv20361100.25 AET5Gv20361100.25 |
High | No | 641 | OG0010053 | Get ORF Coding potential... Type: noncoding Potential: -0.811 Folding energies... MFEI: -34.524 AMFE: -0.647 GC content %: 53.354 | |
| Atauschii_AET5Gv20361100.28 AET5Gv20361100.28 |
High | No | 520 | OG0003767 | Get ORF Coding potential... Type: noncoding Potential: -1.085 Folding energies... MFEI: -20.885 AMFE: -0.551 GC content %: 37.885 | |
| Atauschii_AET5Gv20361100.29 AET5Gv20361100.29 |
High | No | 813 | OG0003767 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -24.453 AMFE: -0.621 GC content %: 39.360 | |
| Atauschii_AET5Gv20361100.3 AET5Gv20361100.3 |
High | No | 1993 | OG0004772 | Get ORF Coding potential... Type: noncoding Potential: -1.312 Folding energies... MFEI: -25.524 AMFE: -0.676 GC content %: 37.782 | |
| Atauschii_AET5Gv20361100.32 AET5Gv20361100.32 |
High | No | 735 | OG0003767 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -24.667 AMFE: -0.621 GC content %: 39.728 | |
| Atauschii_AET5Gv20361100.39 AET5Gv20361100.39 |
High | No | 201 | OG0076361 | Get ORF Coding potential... Type: noncoding Potential: -1.320 Folding energies... MFEI: -19.851 AMFE: -0.547 GC content %: 36.318 | |
| Atauschii_AET5Gv20361100.4 AET5Gv20361100.4 |
High | No | 1960 | OG0004772 | Get ORF Coding potential... Type: noncoding Potential: -1.313 Folding energies... MFEI: -25.735 AMFE: -0.671 GC content %: 38.367 | |
| Atauschii_AET5Gv20361100.40 AET5Gv20361100.40 |
High | No | 1210 | OG0076362 | Get ORF Coding potential... Type: noncoding Potential: -0.318 Folding energies... MFEI: -27.430 AMFE: -0.693 GC content %: 39.587 | |
| Atauschii_AET5Gv20361100.5 AET5Gv20361100.5 |
High | No | 1987 | OG0004772 | Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -25.737 AMFE: -0.667 GC content %: 38.601 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20361100.20 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET5Gv20361100.24 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
