Atauschii AET5Gv20373800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20373800 [ AET5Gv20373800] |
5D | 243220372 | 243226658 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20373800.14 AET5Gv20373800.14 |
High | No | 1629 | OG0010055 | Get ORF Coding potential... Type: noncoding Potential: -0.705 Folding energies... MFEI: -27.287 AMFE: -0.667 GC content %: 40.884 | |
| Atauschii_AET5Gv20373800.18 AET5Gv20373800.18 |
High | No | 1104 | OG0010055 | Get ORF Coding potential... Type: noncoding Potential: -0.999 Folding energies... MFEI: -26.984 AMFE: -0.626 GC content %: 43.116 | |
| Atauschii_AET5Gv20373800.4 AET5Gv20373800.4 |
High | No | 1312 | OG0010055 | Get ORF Coding potential... Type: noncoding Potential: -0.657 Folding energies... MFEI: -33.590 AMFE: -0.628 GC content %: 53.506 | |
| Atauschii_AET5Gv20373800.5 AET5Gv20373800.5 |
High | No | 1454 | OG0010055 | Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -32.015 AMFE: -0.636 GC content %: 50.344 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
