Atauschii AET5Gv20389100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20389100 [ AET5Gv20389100] |
5D | 251264528 | 251265700 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20389100.1 AET5Gv20389100.1 |
High | No | 636 | OG0006990 | Get ORF Coding potential... Type: noncoding Potential: -0.795 Folding energies... MFEI: -29.009 AMFE: -0.623 GC content %: 46.541 | |
| Atauschii_AET5Gv20389100.2 AET5Gv20389100.2 |
High | No | 633 | OG0006990 | Get ORF Coding potential... Type: noncoding Potential: -0.794 Folding energies... MFEI: -28.989 AMFE: -0.628 GC content %: 46.130 | |
| Atauschii_AET5Gv20389100.3 AET5Gv20389100.3 |
High | No | 572 | OG0006990 | Get ORF Coding potential... Type: noncoding Potential: -0.769 Folding energies... MFEI: -29.720 AMFE: -0.616 GC content %: 48.252 | |
| Atauschii_AET5Gv20389100.4 AET5Gv20389100.4 |
High | No | 696 | OG0006990 | Get ORF Coding potential... Type: noncoding Potential: -0.817 Folding energies... MFEI: -28.836 AMFE: -0.619 GC content %: 46.552 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
