Atauschii AET5Gv20456900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20456900 [ AET5Gv20456900] |
5D | 297982694 | 297986618 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20456900.11 AET5Gv20456900.11 |
High | No | 1697 | OG0003769 | Get ORF Coding potential... Type: noncoding Potential: -0.611 Folding energies... MFEI: -31.956 AMFE: -0.693 GC content %: 46.081 | |
| Atauschii_AET5Gv20456900.13 AET5Gv20456900.13 |
High | No | 2533 | OG0003769 | Get ORF Coding potential... Type: noncoding Potential: -0.647 Folding energies... MFEI: -29.487 AMFE: -0.685 GC content %: 43.032 | |
| Atauschii_AET5Gv20456900.15 AET5Gv20456900.15 |
High | No | 1569 | OG0003769 | Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -26.947 AMFE: -0.683 GC content %: 39.452 | |
| Atauschii_AET5Gv20456900.16 AET5Gv20456900.16 |
High | No | 1951 | OG0003769 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -24.787 AMFE: -0.667 GC content %: 37.160 | |
| Atauschii_AET5Gv20456900.2 AET5Gv20456900.2 |
High | No | 2402 | OG0003769 | Get ORF Coding potential... Type: noncoding Potential: -0.694 Folding energies... MFEI: -31.366 AMFE: -0.687 GC content %: 45.670 | |
| Atauschii_AET5Gv20456900.4 AET5Gv20456900.4 |
High | No | 3064 | OG0003769 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -29.514 AMFE: -0.680 GC content %: 43.375 | |
| Atauschii_AET5Gv20456900.5 AET5Gv20456900.5 |
High | No | 2375 | OG0003769 | Get ORF Coding potential... Type: noncoding Potential: -0.641 Folding energies... MFEI: -31.798 AMFE: -0.700 GC content %: 45.432 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
