GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv20473400 [ AET5Gv20473400]	5D	308256500	308263892	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv20473400.16 AET5Gv20473400.16	High	No	316	OG0076604		Get ORF Coding potential... Type: noncoding Potential: -0.758 Folding energies... MFEI: -19.430 AMFE: -0.476 GC content %: 40.823
Atauschii_AET5Gv20473400.20 AET5Gv20473400.20	High	No	510	OG0076605		Get ORF Coding potential... Type: noncoding Potential: -0.831 Folding energies... MFEI: -28.863 AMFE: -0.582 GC content %: 49.608
Atauschii_AET5Gv20473400.21 AET5Gv20473400.21	High	No	394	OG0076606		Get ORF Coding potential... Type: noncoding Potential: -0.874 Folding energies... MFEI: -20.355 AMFE: -0.472 GC content %: 43.147

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).