Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET5Gv20490600 [ AET5Gv20490600] |
5D | 319801959 | 319804922 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET5Gv20490600.3 AET5Gv20490600.3 |
Low | No | 245 | OG0025595 | Get ORF Coding potential... Type: noncoding Potential: -0.497 Folding energies... MFEI: -24.408 AMFE: -0.610 GC content %: 40.000 | |
Atauschii_AET5Gv20490600.4 AET5Gv20490600.4 |
Low | No | 271 | OG0016489 | Get ORF Coding potential... Type: noncoding Potential: -0.141 Folding energies... MFEI: -24.760 AMFE: -0.627 GC content %: 39.483 | |
Atauschii_AET5Gv20490600.5 AET5Gv20490600.5 |
Low | No | 244 | OG0025595 | Get ORF Coding potential... Type: noncoding Potential: -0.476 Folding energies... MFEI: -24.467 AMFE: -0.609 GC content %: 40.164 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET5Gv20490600.4 | SwissProt | 2021-04-01 | Q6H611 | 3.29e-11 |
Atauschii_AET5Gv20490600.5 | SwissProt | 2021-04-01 | Q6H611 | 1.47e-11 |
Atauschii_AET5Gv20490600.3 | SwissProt | 2021-04-01 | Q6H611 | 2.38e-11 |