Atauschii AET5Gv20495400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20495400 [ AET5Gv20495400] |
5D | 323094489 | 323098895 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20495400.1 AET5Gv20495400.1 |
High | No | 1459 | OG0000783 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -33.139 AMFE: -0.620 GC content %: 53.461 | |
| Atauschii_AET5Gv20495400.10 AET5Gv20495400.10 |
High | No | 1388 | OG0000783 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -30.850 AMFE: -0.640 GC content %: 48.199 | |
| Atauschii_AET5Gv20495400.11 AET5Gv20495400.11 |
High | No | 1096 | OG0000783 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -30.055 AMFE: -0.600 GC content %: 50.091 | |
| Atauschii_AET5Gv20495400.12 AET5Gv20495400.12 |
High | No | 1138 | OG0000783 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -30.422 AMFE: -0.604 GC content %: 50.351 | |
| Atauschii_AET5Gv20495400.13 AET5Gv20495400.13 |
High | No | 1145 | OG0000783 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -30.192 AMFE: -0.599 GC content %: 50.393 | |
| Atauschii_AET5Gv20495400.14 AET5Gv20495400.14 |
High | No | 1391 | OG0000783 | Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -30.942 AMFE: -0.619 GC content %: 49.964 | |
| Atauschii_AET5Gv20495400.15 AET5Gv20495400.15 |
High | No | 1375 | OG0000783 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -30.560 AMFE: -0.611 GC content %: 50.036 | |
| Atauschii_AET5Gv20495400.16 AET5Gv20495400.16 |
High | No | 595 | OG0000783 | Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -27.597 AMFE: -0.613 GC content %: 45.042 | |
| Atauschii_AET5Gv20495400.17 AET5Gv20495400.17 |
High | No | 1119 | OG0000783 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -31.769 AMFE: -0.610 GC content %: 52.100 | |
| Atauschii_AET5Gv20495400.18 AET5Gv20495400.18 |
High | No | 479 | OG0000783 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -32.589 AMFE: -0.546 GC content %: 59.708 | |
| Atauschii_AET5Gv20495400.2 AET5Gv20495400.2 |
High | No | 974 | OG0000783 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -34.055 AMFE: -0.594 GC content %: 57.290 | |
| Atauschii_AET5Gv20495400.3 AET5Gv20495400.3 |
High | No | 1183 | OG0000783 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -33.753 AMFE: -0.630 GC content %: 53.593 | |
| Atauschii_AET5Gv20495400.5 AET5Gv20495400.5 |
High | No | 1105 | OG0000783 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -33.529 AMFE: -0.616 GC content %: 54.389 | |
| Atauschii_AET5Gv20495400.6 AET5Gv20495400.6 |
High | No | 896 | OG0000783 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -33.092 AMFE: -0.586 GC content %: 56.473 | |
| Atauschii_AET5Gv20495400.7 AET5Gv20495400.7 |
High | No | 760 | OG0000783 | Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -30.684 AMFE: -0.606 GC content %: 50.658 | |
| Atauschii_AET5Gv20495400.9 AET5Gv20495400.9 |
High | No | 1658 | OG0000783 | Get ORF Coding potential... Type: noncoding Potential: -1.189 Folding energies... MFEI: -30.772 AMFE: -0.657 GC content %: 46.864 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
