Atauschii AET5Gv20506200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20506200 [ AET5Gv20506200] |
5D | 329784576 | 329792624 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20506200.22 AET5Gv20506200.22 |
Low | Yes | 3144 | OG0000168 | Get ORF Coding potential... Type: noncoding Potential: -0.943 Folding energies... MFEI: -27.131 AMFE: -0.680 GC content %: 39.885 | |
| Atauschii_AET5Gv20506200.26 AET5Gv20506200.26 |
Low | No | 2073 | OG0001312 | Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -29.542 AMFE: -0.671 GC content %: 44.042 | |
| Atauschii_AET5Gv20506200.27 AET5Gv20506200.27 |
Low | Yes | 2855 | OG0001312 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -26.921 AMFE: -0.687 GC content %: 39.194 | |
| Atauschii_AET5Gv20506200.31 AET5Gv20506200.31 |
Low | No | 1903 | OG0001312 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -29.049 AMFE: -0.656 GC content %: 44.298 | |
| Atauschii_AET5Gv20506200.32 AET5Gv20506200.32 |
Low | No | 2175 | OG0000168 | Get ORF Coding potential... Type: noncoding Potential: -1.227 Folding energies... MFEI: -29.645 AMFE: -0.657 GC content %: 45.103 | |
| Atauschii_AET5Gv20506200.34 AET5Gv20506200.34 |
Low | No | 2043 | OG0001312 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -28.375 AMFE: -0.659 GC content %: 43.074 | |
| Atauschii_AET5Gv20506200.35 AET5Gv20506200.35 |
Low | No | 1386 | OG0000168 | Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -27.482 AMFE: -0.661 GC content %: 41.558 | |
| Atauschii_AET5Gv20506200.37 AET5Gv20506200.37 |
Low | No | 1517 | OG0001312 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -29.394 AMFE: -0.672 GC content %: 43.771 | |
| Atauschii_AET5Gv20506200.38 AET5Gv20506200.38 |
Low | No | 1551 | OG0001312 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -28.104 AMFE: -0.660 GC content %: 42.553 | |
| Atauschii_AET5Gv20506200.40 AET5Gv20506200.40 |
Low | No | 1761 | OG0001312 | Get ORF Coding potential... Type: noncoding Potential: -1.168 Folding energies... MFEI: -31.766 AMFE: -0.675 GC content %: 47.076 | |
| Atauschii_AET5Gv20506200.42 AET5Gv20506200.42 |
Low | No | 1348 | OG0001312 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -27.085 AMFE: -0.659 GC content %: 41.098 | |
| Atauschii_AET5Gv20506200.43 AET5Gv20506200.43 |
Low | No | 1002 | OG0001312 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -28.174 AMFE: -0.639 GC content %: 44.112 | |
| Atauschii_AET5Gv20506200.44 AET5Gv20506200.44 |
Low | No | 348 | OG0076674 | Get ORF Coding potential... Type: noncoding Potential: -0.053 Folding energies... MFEI: -24.339 AMFE: -0.543 GC content %: 44.828 | |
| Atauschii_AET5Gv20506200.45 AET5Gv20506200.45 |
Low | No | 1130 | OG0001312 | Get ORF Coding potential... Type: noncoding Potential: -1.420 Folding energies... MFEI: -29.637 AMFE: -0.634 GC content %: 46.726 | |
| Atauschii_AET5Gv20506200.46 AET5Gv20506200.46 |
High | No | 960 | OG0001312 | Get ORF Coding potential... Type: noncoding Potential: -1.446 Folding energies... MFEI: -31.344 AMFE: -0.646 GC content %: 48.542 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20506200.40 | SwissProt | 2021-04-01 | Q9FW70 | 9.2e-6 |
| Atauschii_AET5Gv20506200.42 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET5Gv20506200.32 | SwissProt | 2021-04-01 | Q96CA5 | 5.15e-6 |
| Atauschii_AET5Gv20506200.34 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET5Gv20506200.22 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; RC/Helitron | |
| Atauschii_AET5Gv20506200.43 | SwissProt | 2021-04-01 | Q9FW70 | 5.96e-7 |
| Atauschii_AET5Gv20506200.43 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET5Gv20506200.34 | SwissProt | 2021-04-01 | Q96CA5 | 4.45e-6 |
| Atauschii_AET5Gv20506200.35 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET5Gv20506200.22 | SwissProt | 2021-04-01 | Q96CA5 | 8.13e-6 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
