GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv20509300 [ AET5Gv20509300]	5D	331746333	331751063	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv20509300.5 AET5Gv20509300.5	High	No	421	OG0006996		Get ORF Coding potential... Type: noncoding Potential: -0.521 Folding energies... MFEI: -33.159 AMFE: -0.602 GC content %: 55.107
Atauschii_AET5Gv20509300.6 AET5Gv20509300.6	High	No	973	OG0006996		Get ORF Coding potential... Type: noncoding Potential: -0.189 Folding energies... MFEI: -30.113 AMFE: -0.634 GC content %: 47.482
Atauschii_AET5Gv20509300.7 AET5Gv20509300.7	High	No	864	OG0006996		Get ORF Coding potential... Type: noncoding Potential: -0.895 Folding energies... MFEI: -25.301 AMFE: -0.602 GC content %: 42.014

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).