GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv20526200 [ AET5Gv20526200]	5D	339742554	339749313	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv20526200.1 AET5Gv20526200.1	High	No	2287	OG0016494		Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -26.694 AMFE: -0.615 GC content %: 43.419
Atauschii_AET5Gv20526200.10 AET5Gv20526200.10	High	No	2683	OG0016494		Get ORF Coding potential... Type: noncoding Potential: -1.059 Folding energies... MFEI: -28.997 AMFE: -0.647 GC content %: 44.838
Atauschii_AET5Gv20526200.11 AET5Gv20526200.11	High	No	2671	OG0016494		Get ORF Coding potential... Type: noncoding Potential: -1.059 Folding energies... MFEI: -29.060 AMFE: -0.648 GC content %: 44.815

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).