Atauschii AET5Gv20541800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20541800 [ AET5Gv20541800] |
5D | 346204112 | 346206693 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20541800.1 AET5Gv20541800.1 |
Low | No | 1089 | OG0000866 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -28.118 AMFE: -0.584 GC content %: 48.118 | |
| Atauschii_AET5Gv20541800.10 AET5Gv20541800.10 |
Low | No | 831 | OG0000866 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -24.741 AMFE: -0.627 GC content %: 39.471 | |
| Atauschii_AET5Gv20541800.2 AET5Gv20541800.2 |
Low | No | 956 | OG0000866 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -28.274 AMFE: -0.569 GC content %: 49.686 | |
| Atauschii_AET5Gv20541800.3 AET5Gv20541800.3 |
Low | No | 2535 | OG0000866 | Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -30.868 AMFE: -0.677 GC content %: 45.602 | |
| Atauschii_AET5Gv20541800.4 AET5Gv20541800.4 |
Low | No | 2432 | OG0000866 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -30.773 AMFE: -0.671 GC content %: 45.888 | |
| Atauschii_AET5Gv20541800.5 AET5Gv20541800.5 |
Low | No | 2343 | OG0000866 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -31.272 AMFE: -0.674 GC content %: 46.394 | |
| Atauschii_AET5Gv20541800.6 AET5Gv20541800.6 |
Low | No | 1253 | OG0000866 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -28.978 AMFE: -0.611 GC content %: 47.406 | |
| Atauschii_AET5Gv20541800.7 AET5Gv20541800.7 |
High | No | 371 | OG0076742 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -32.615 AMFE: -0.480 GC content %: 67.925 | |
| Atauschii_AET5Gv20541800.8 AET5Gv20541800.8 |
Low | No | 2251 | OG0000866 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -31.142 AMFE: -0.670 GC content %: 46.468 | |
| Atauschii_AET5Gv20541800.9 AET5Gv20541800.9 |
Low | No | 995 | OG0000866 | Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -29.447 AMFE: -0.597 GC content %: 49.347 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20541800.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20541800.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20541800.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20541800.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20541800.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20541800.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20541800.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20541800.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20541800.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
