Atauschii AET5Gv20542900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20542900 [ AET5Gv20542900] |
5D | 346459538 | 346462241 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20542900.1 AET5Gv20542900.1 |
High | No | 275 | OG0076744 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -31.782 AMFE: -0.520 GC content %: 61.091 | |
| Atauschii_AET5Gv20542900.2 AET5Gv20542900.2 |
High | No | 704 | OG0006999 | Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -37.330 AMFE: -0.636 GC content %: 58.665 | |
| Atauschii_AET5Gv20542900.4 AET5Gv20542900.4 |
High | No | 732 | OG0025612 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -36.803 AMFE: -0.662 GC content %: 55.601 | |
| Atauschii_AET5Gv20542900.6 AET5Gv20542900.6 |
High | No | 594 | OG0025612 | Get ORF Coding potential... Type: noncoding Potential: -0.769 Folding energies... MFEI: -29.108 AMFE: -0.629 GC content %: 46.296 | |
| Atauschii_AET5Gv20542900.7 AET5Gv20542900.7 |
High | No | 241 | OG0006999 | Get ORF Coding potential... Type: noncoding Potential: -0.559 Folding energies... MFEI: -34.108 AMFE: -0.567 GC content %: 60.166 | |
| Atauschii_AET5Gv20542900.8 AET5Gv20542900.8 |
High | No | 284 | OG0006999 | Get ORF Coding potential... Type: noncoding Potential: -0.602 Folding energies... MFEI: -33.662 AMFE: -0.579 GC content %: 58.099 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
