Atauschii AET5Gv20559900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20559900 [ AET5Gv20559900] |
5D | 356052810 | 356056744 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20559900.13 AET5Gv20559900.13 |
High | No | 1132 | OG0000784 | Get ORF Coding potential... Type: noncoding Potential: -0.134 Folding energies... MFEI: -32.482 AMFE: -0.649 GC content %: 50.088 | |
| Atauschii_AET5Gv20559900.15 AET5Gv20559900.15 |
Low | No | 1245 | OG0000784 | Get ORF Coding potential... Type: noncoding Potential: -0.363 Folding energies... MFEI: -28.048 AMFE: -0.626 GC content %: 44.819 | |
| Atauschii_AET5Gv20559900.17 AET5Gv20559900.17 |
Low | No | 1217 | OG0000784 | Get ORF Coding potential... Type: noncoding Potential: -0.260 Folding energies... MFEI: -27.757 AMFE: -0.621 GC content %: 44.700 | |
| Atauschii_AET5Gv20559900.18 AET5Gv20559900.18 |
Low | No | 1024 | OG0000784 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -27.178 AMFE: -0.608 GC content %: 44.727 | |
| Atauschii_AET5Gv20559900.19 AET5Gv20559900.19 |
Low | No | 1035 | OG0000784 | Get ORF Coding potential... Type: noncoding Potential: -0.533 Folding energies... MFEI: -27.836 AMFE: -0.620 GC content %: 44.928 | |
| Atauschii_AET5Gv20559900.20 AET5Gv20559900.20 |
Low | No | 768 | OG0000784 | Get ORF Coding potential... Type: noncoding Potential: -1.396 Folding energies... MFEI: -27.044 AMFE: -0.592 GC content %: 45.703 | |
| Atauschii_AET5Gv20559900.21 AET5Gv20559900.21 |
Low | No | 754 | OG0000784 | Get ORF Coding potential... Type: noncoding Potential: -1.395 Folding energies... MFEI: -26.817 AMFE: -0.586 GC content %: 45.756 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20559900.20 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET5Gv20559900.21 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET5Gv20559900.15 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET5Gv20559900.17 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET5Gv20559900.18 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET5Gv20559900.19 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
