Atauschii AET5Gv20580900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20580900 [ AET5Gv20580900] |
5D | 365943968 | 365948802 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20580900.13 AET5Gv20580900.13 |
High | No | 1074 | OG0001586 | Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -26.657 AMFE: -0.640 GC content %: 41.620 | |
| Atauschii_AET5Gv20580900.14 AET5Gv20580900.14 |
High | No | 1527 | OG0001586 | Get ORF Coding potential... Type: noncoding Potential: -1.226 Folding energies... MFEI: -24.231 AMFE: -0.636 GC content %: 38.114 | |
| Atauschii_AET5Gv20580900.15 AET5Gv20580900.15 |
Low | No | 2107 | OG0001586 | Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -25.828 AMFE: -0.651 GC content %: 39.677 | |
| Atauschii_AET5Gv20580900.16 AET5Gv20580900.16 |
High | No | 1166 | OG0001586 | Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -23.834 AMFE: -0.632 GC content %: 37.736 | |
| Atauschii_AET5Gv20580900.18 AET5Gv20580900.18 |
Low | No | 203 | OG0076817 | Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -33.202 AMFE: -0.557 GC content %: 59.606 | |
| Atauschii_AET5Gv20580900.2 AET5Gv20580900.2 |
Low | No | 1506 | OG0001586 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -23.260 AMFE: -0.633 GC content %: 36.720 | |
| Atauschii_AET5Gv20580900.3 AET5Gv20580900.3 |
Low | No | 1783 | OG0001586 | Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -24.448 AMFE: -0.638 GC content %: 38.306 | |
| Atauschii_AET5Gv20580900.4 AET5Gv20580900.4 |
Low | No | 2919 | OG0001586 | Get ORF Coding potential... Type: noncoding Potential: -1.271 Folding energies... MFEI: -24.782 AMFE: -0.653 GC content %: 37.924 | |
| Atauschii_AET5Gv20580900.6 AET5Gv20580900.6 |
Low | No | 3582 | OG0001586 | Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -24.866 AMFE: -0.656 GC content %: 37.912 | |
| Atauschii_AET5Gv20580900.7 AET5Gv20580900.7 |
Low | No | 2865 | OG0001586 | Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -25.389 AMFE: -0.652 GC content %: 38.953 | |
| Atauschii_AET5Gv20580900.8 AET5Gv20580900.8 |
Low | No | 2930 | OG0001586 | Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -25.761 AMFE: -0.661 GC content %: 38.976 | |
| Atauschii_AET5Gv20580900.9 AET5Gv20580900.9 |
High | No | 450 | OG0001586 | Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -23.822 AMFE: -0.599 GC content %: 39.778 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20580900.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 | |
| Atauschii_AET5Gv20580900.15 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 | |
| Atauschii_AET5Gv20580900.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 | |
| Atauschii_AET5Gv20580900.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20580900.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20580900.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/hAT-Tag1 | |
| Atauschii_AET5Gv20580900.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 | |
| Atauschii_AET5Gv20580900.18 | SwissProt | 2021-04-01 | Q1ZXI6 | 1.75e-7 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
