GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv20582600 [ AET5Gv20582600]	5D	367660071	367665925	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv20582600.2 AET5Gv20582600.2	Low	No	1388	OG0016503		Get ORF Coding potential... Type: coding Potential: 0.584 Folding energies... MFEI: -26.549 AMFE: -0.641 GC content %: 41.427
Atauschii_AET5Gv20582600.3 AET5Gv20582600.3	Low	No	1822	OG0016503		Get ORF Coding potential... Type: coding Potential: 0.089 Folding energies... MFEI: -26.147 AMFE: -0.644 GC content %: 40.615
Atauschii_AET5Gv20582600.5 AET5Gv20582600.5	High	No	402	OG0016503		Get ORF Coding potential... Type: noncoding Potential: -0.637 Folding energies... MFEI: -24.104 AMFE: -0.591 GC content %: 40.796

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).