Atauschii AET5Gv20588500
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20588500 [ AET5Gv20588500] |
5D | 369663657 | 369668195 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20588500.1 AET5Gv20588500.1 |
High | No | 2513 | OG0001314 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -24.867 AMFE: -0.662 GC content %: 37.565 | |
| Atauschii_AET5Gv20588500.10 AET5Gv20588500.10 |
High | No | 585 | OG0001314 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -23.265 AMFE: -0.621 GC content %: 37.436 | |
| Atauschii_AET5Gv20588500.11 AET5Gv20588500.11 |
Low | No | 2061 | OG0001314 | Get ORF Coding potential... Type: noncoding Potential: -1.241 Folding energies... MFEI: -24.498 AMFE: -0.658 GC content %: 37.215 | |
| Atauschii_AET5Gv20588500.2 AET5Gv20588500.2 |
Low | No | 3791 | OG0001314 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -24.904 AMFE: -0.672 GC content %: 37.061 | |
| Atauschii_AET5Gv20588500.3 AET5Gv20588500.3 |
Low | No | 2421 | OG0001314 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -25.304 AMFE: -0.665 GC content %: 38.042 | |
| Atauschii_AET5Gv20588500.4 AET5Gv20588500.4 |
Low | No | 2467 | OG0001314 | Get ORF Coding potential... Type: noncoding Potential: -1.124 Folding energies... MFEI: -24.301 AMFE: -0.668 GC content %: 36.360 | |
| Atauschii_AET5Gv20588500.5 AET5Gv20588500.5 |
Low | No | 1877 | OG0001314 | Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -25.450 AMFE: -0.659 GC content %: 38.625 | |
| Atauschii_AET5Gv20588500.6 AET5Gv20588500.6 |
High | No | 612 | OG0001314 | Get ORF Coding potential... Type: noncoding Potential: -1.325 Folding energies... MFEI: -24.886 AMFE: -0.612 GC content %: 40.686 | |
| Atauschii_AET5Gv20588500.7 AET5Gv20588500.7 |
High | No | 742 | OG0001314 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -25.310 AMFE: -0.632 GC content %: 40.027 | |
| Atauschii_AET5Gv20588500.8 AET5Gv20588500.8 |
Low | No | 2534 | OG0001314 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -24.152 AMFE: -0.670 GC content %: 36.069 | |
| Atauschii_AET5Gv20588500.9 AET5Gv20588500.9 |
High | No | 1068 | OG0001314 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -21.657 AMFE: -0.609 GC content %: 35.581 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20588500.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA; DNA/CMC-EnSpm; LTR/Gypsy | |
| Atauschii_AET5Gv20588500.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20588500.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA; LTR/Gypsy | |
| Atauschii_AET5Gv20588500.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20588500.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA; LTR/Gypsy | |
| Atauschii_AET5Gv20588500.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA; LTR/Gypsy |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
