Atauschii AET5Gv20613900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20613900 [ AET5Gv20613900] |
5D | 379045318 | 379048590 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20613900.1 AET5Gv20613900.1 |
High | No | 2135 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.133 Folding energies... MFEI: -23.925 AMFE: -0.568 GC content %: 42.108 | |
| Atauschii_AET5Gv20613900.10 AET5Gv20613900.10 |
High | No | 2710 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -25.517 AMFE: -0.590 GC content %: 43.284 | |
| Atauschii_AET5Gv20613900.11 AET5Gv20613900.11 |
High | No | 1875 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -23.563 AMFE: -0.550 GC content %: 42.827 | |
| Atauschii_AET5Gv20613900.12 AET5Gv20613900.12 |
High | No | 2172 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -24.213 AMFE: -0.570 GC content %: 42.449 | |
| Atauschii_AET5Gv20613900.13 AET5Gv20613900.13 |
High | No | 1661 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -24.576 AMFE: -0.568 GC content %: 43.287 | |
| Atauschii_AET5Gv20613900.14 AET5Gv20613900.14 |
High | No | 2379 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -22.337 AMFE: -0.550 GC content %: 40.605 | |
| Atauschii_AET5Gv20613900.15 AET5Gv20613900.15 |
High | No | 1296 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -24.367 AMFE: -0.552 GC content %: 44.136 | |
| Atauschii_AET5Gv20613900.2 AET5Gv20613900.2 |
High | No | 2212 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -24.091 AMFE: -0.569 GC content %: 42.315 | |
| Atauschii_AET5Gv20613900.3 AET5Gv20613900.3 |
High | No | 2322 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -23.630 AMFE: -0.569 GC content %: 41.559 | |
| Atauschii_AET5Gv20613900.4 AET5Gv20613900.4 |
High | No | 2208 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -24.896 AMFE: -0.580 GC content %: 42.889 | |
| Atauschii_AET5Gv20613900.5 AET5Gv20613900.5 |
High | No | 2755 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -25.430 AMFE: -0.590 GC content %: 43.085 | |
| Atauschii_AET5Gv20613900.6 AET5Gv20613900.6 |
High | No | 2584 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.150 Folding energies... MFEI: -25.735 AMFE: -0.591 GC content %: 43.576 | |
| Atauschii_AET5Gv20613900.7 AET5Gv20613900.7 |
High | No | 3038 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -25.079 AMFE: -0.592 GC content %: 42.396 | |
| Atauschii_AET5Gv20613900.8 AET5Gv20613900.8 |
High | No | 2775 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -25.384 AMFE: -0.591 GC content %: 42.919 | |
| Atauschii_AET5Gv20613900.9 AET5Gv20613900.9 |
High | No | 2670 | OG0000118 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -25.753 AMFE: -0.589 GC content %: 43.745 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
