Atauschii AET5Gv20616000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20616000 [ AET5Gv20616000] |
5D | 380516827 | 380517856 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20616000.1 AET5Gv20616000.1 |
Low | No | 722 | OG0016508 | Get ORF Coding potential... Type: coding Potential: 1.784 Folding energies... MFEI: -41.856 AMFE: -0.703 GC content %: 59.557 | |
| Atauschii_AET5Gv20616000.2 AET5Gv20616000.2 |
Low | No | 340 | OG0016508 | Get ORF Coding potential... Type: coding Potential: 1.908 Folding energies... MFEI: -40.882 AMFE: -0.668 GC content %: 61.176 | |
| Atauschii_AET5Gv20616000.3 AET5Gv20616000.3 |
Low | No | 422 | OG0016508 | Get ORF Coding potential... Type: coding Potential: 1.777 Folding energies... MFEI: -44.052 AMFE: -0.707 GC content %: 62.322 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
