GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv20620800 [ AET5Gv20620800]	5D	382110830	382113639	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv20620800.1 AET5Gv20620800.1	High	No	292	OG0025626		Get ORF Coding potential... Type: noncoding Potential: -0.426 Folding energies... MFEI: -42.466 AMFE: -0.590 GC content %: 71.918
Atauschii_AET5Gv20620800.2 AET5Gv20620800.2	High	No	945	OG0025626		Get ORF Coding potential... Type: noncoding Potential: -0.731 Folding energies... MFEI: -29.386 AMFE: -0.601 GC content %: 48.889
Atauschii_AET5Gv20620800.3 AET5Gv20620800.3	High	No	558	OG0007000		Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -43.100 AMFE: -0.652 GC content %: 66.129

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).