GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv20643100 [ AET5Gv20643100]	5D	390691564	390692967	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv20643100.1 AET5Gv20643100.1	High	No	554	OG0007001		Get ORF Coding potential... Type: noncoding Potential: -0.651 Folding energies... MFEI: -31.859 AMFE: -0.642 GC content %: 49.639
Atauschii_AET5Gv20643100.2 AET5Gv20643100.2	High	No	959	OG0007001		Get ORF Coding potential... Type: noncoding Potential: -0.785 Folding energies... MFEI: -31.064 AMFE: -0.690 GC content %: 45.047
Atauschii_AET5Gv20643100.3 AET5Gv20643100.3	High	No	585	OG0007001		Get ORF Coding potential... Type: noncoding Potential: -0.666 Folding energies... MFEI: -32.615 AMFE: -0.667 GC content %: 48.889
Atauschii_AET5Gv20643100.4 AET5Gv20643100.4	High	No	551	OG0007001		Get ORF Coding potential... Type: noncoding Potential: -0.650 Folding energies... MFEI: -32.704 AMFE: -0.662 GC content %: 49.365
Atauschii_AET5Gv20643100.5 AET5Gv20643100.5	High	No	269	OG0007001		Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -21.970 AMFE: -0.563 GC content %: 39.033

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).