Atauschii AET5Gv20650700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20650700 [ AET5Gv20650700] |
5D | 393691958 | 393698037 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20650700.1 AET5Gv20650700.1 |
Low | No | 3389 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -28.675 AMFE: -0.647 GC content %: 44.320 | |
| Atauschii_AET5Gv20650700.10 AET5Gv20650700.10 |
Low | No | 4179 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -26.583 AMFE: -0.644 GC content %: 41.254 | |
| Atauschii_AET5Gv20650700.11 AET5Gv20650700.11 |
Low | No | 4957 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -26.524 AMFE: -0.653 GC content %: 40.609 | |
| Atauschii_AET5Gv20650700.12 AET5Gv20650700.12 |
Low | No | 4072 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -27.193 AMFE: -0.650 GC content %: 41.822 | |
| Atauschii_AET5Gv20650700.13 AET5Gv20650700.13 |
Low | No | 4201 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -26.822 AMFE: -0.649 GC content %: 41.300 | |
| Atauschii_AET5Gv20650700.14 AET5Gv20650700.14 |
High | No | 358 | OG0076961 | Get ORF Coding potential... Type: noncoding Potential: -1.339 Folding energies... MFEI: -25.168 AMFE: -0.593 GC content %: 42.458 | |
| Atauschii_AET5Gv20650700.15 AET5Gv20650700.15 |
High | No | 1326 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.315 Folding energies... MFEI: -27.624 AMFE: -0.685 GC content %: 40.347 | |
| Atauschii_AET5Gv20650700.16 AET5Gv20650700.16 |
High | No | 4304 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -26.478 AMFE: -0.647 GC content %: 40.892 | |
| Atauschii_AET5Gv20650700.17 AET5Gv20650700.17 |
High | No | 5234 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -26.181 AMFE: -0.646 GC content %: 40.504 | |
| Atauschii_AET5Gv20650700.18 AET5Gv20650700.18 |
High | No | 2380 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -25.508 AMFE: -0.686 GC content %: 37.185 | |
| Atauschii_AET5Gv20650700.19 AET5Gv20650700.19 |
High | No | 4129 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -26.997 AMFE: -0.641 GC content %: 42.117 | |
| Atauschii_AET5Gv20650700.2 AET5Gv20650700.2 |
Low | No | 4907 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -26.923 AMFE: -0.648 GC content %: 41.553 | |
| Atauschii_AET5Gv20650700.20 AET5Gv20650700.20 |
High | No | 4011 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -26.875 AMFE: -0.649 GC content %: 41.436 | |
| Atauschii_AET5Gv20650700.21 AET5Gv20650700.21 |
High | No | 3508 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -25.949 AMFE: -0.658 GC content %: 39.453 | |
| Atauschii_AET5Gv20650700.22 AET5Gv20650700.22 |
High | No | 5091 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -26.091 AMFE: -0.644 GC content %: 40.503 | |
| Atauschii_AET5Gv20650700.23 AET5Gv20650700.23 |
High | No | 2660 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -29.523 AMFE: -0.656 GC content %: 45.038 | |
| Atauschii_AET5Gv20650700.24 AET5Gv20650700.24 |
High | No | 2622 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -29.443 AMFE: -0.653 GC content %: 45.118 | |
| Atauschii_AET5Gv20650700.25 AET5Gv20650700.25 |
High | No | 4091 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -26.734 AMFE: -0.649 GC content %: 41.188 | |
| Atauschii_AET5Gv20650700.26 AET5Gv20650700.26 |
High | No | 3643 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.230 Folding energies... MFEI: -27.713 AMFE: -0.649 GC content %: 42.712 | |
| Atauschii_AET5Gv20650700.27 AET5Gv20650700.27 |
High | No | 3464 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -27.893 AMFE: -0.648 GC content %: 43.014 | |
| Atauschii_AET5Gv20650700.28 AET5Gv20650700.28 |
High | No | 4842 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -26.066 AMFE: -0.644 GC content %: 40.500 | |
| Atauschii_AET5Gv20650700.29 AET5Gv20650700.29 |
High | No | 2422 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -29.240 AMFE: -0.645 GC content %: 45.334 | |
| Atauschii_AET5Gv20650700.3 AET5Gv20650700.3 |
Low | No | 4410 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -27.085 AMFE: -0.638 GC content %: 42.449 | |
| Atauschii_AET5Gv20650700.30 AET5Gv20650700.30 |
High | No | 2516 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -28.231 AMFE: -0.631 GC content %: 44.754 | |
| Atauschii_AET5Gv20650700.31 AET5Gv20650700.31 |
High | No | 1337 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -29.417 AMFE: -0.602 GC content %: 48.841 | |
| Atauschii_AET5Gv20650700.32 AET5Gv20650700.32 |
High | No | 1786 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -28.583 AMFE: -0.609 GC content %: 46.920 | |
| Atauschii_AET5Gv20650700.33 AET5Gv20650700.33 |
High | No | 649 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -23.837 AMFE: -0.512 GC content %: 46.533 | |
| Atauschii_AET5Gv20650700.4 AET5Gv20650700.4 |
Low | No | 5491 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -26.252 AMFE: -0.644 GC content %: 40.794 | |
| Atauschii_AET5Gv20650700.5 AET5Gv20650700.5 |
Low | No | 2069 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -28.231 AMFE: -0.641 GC content %: 44.031 | |
| Atauschii_AET5Gv20650700.6 AET5Gv20650700.6 |
Low | No | 3512 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.227 Folding energies... MFEI: -28.573 AMFE: -0.657 GC content %: 43.479 | |
| Atauschii_AET5Gv20650700.7 AET5Gv20650700.7 |
Low | No | 3759 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -27.949 AMFE: -0.651 GC content %: 42.964 | |
| Atauschii_AET5Gv20650700.8 AET5Gv20650700.8 |
Low | No | 4476 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.109 Folding energies... MFEI: -26.798 AMFE: -0.647 GC content %: 41.421 | |
| Atauschii_AET5Gv20650700.9 AET5Gv20650700.9 |
Low | No | 4812 | OG0000169 | Get ORF Coding potential... Type: noncoding Potential: -1.078 Folding energies... MFEI: -26.342 AMFE: -0.642 GC content %: 41.002 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20650700.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20650700.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20650700.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20650700.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20650700.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20650700.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20650700.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20650700.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20650700.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20650700.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
