Atauschii AET5Gv20653100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20653100 [ AET5Gv20653100] |
5D | 394226367 | 394231013 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20653100.10 AET5Gv20653100.10 |
High | No | 735 | OG0003775 | Get ORF Coding potential... Type: noncoding Potential: -0.576 Folding energies... MFEI: -29.578 AMFE: -0.655 GC content %: 45.170 | |
| Atauschii_AET5Gv20653100.11 AET5Gv20653100.11 |
High | No | 390 | OG0003775 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -25.077 AMFE: -0.596 GC content %: 42.051 | |
| Atauschii_AET5Gv20653100.12 AET5Gv20653100.12 |
High | No | 227 | OG0076968 | Get ORF Coding potential... Type: noncoding Potential: -0.902 Folding energies... MFEI: -16.872 AMFE: -0.399 GC content %: 42.291 | |
| Atauschii_AET5Gv20653100.6 AET5Gv20653100.6 |
High | No | 707 | OG0003775 | Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -31.853 AMFE: -0.622 GC content %: 51.202 | |
| Atauschii_AET5Gv20653100.7 AET5Gv20653100.7 |
High | No | 605 | OG0003775 | Get ORF Coding potential... Type: noncoding Potential: -0.538 Folding energies... MFEI: -34.430 AMFE: -0.627 GC content %: 54.876 | |
| Atauschii_AET5Gv20653100.8 AET5Gv20653100.8 |
High | No | 672 | OG0003775 | Get ORF Coding potential... Type: noncoding Potential: -0.569 Folding energies... MFEI: -29.271 AMFE: -0.628 GC content %: 46.577 | |
| Atauschii_AET5Gv20653100.9 AET5Gv20653100.9 |
High | No | 510 | OG0003775 | Get ORF Coding potential... Type: noncoding Potential: -0.914 Folding energies... MFEI: -28.549 AMFE: -0.582 GC content %: 49.020 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
