Atauschii AET5Gv20669200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20669200 [ AET5Gv20669200] |
5D | 399231595 | 399235615 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20669200.1 AET5Gv20669200.1 |
High | No | 3421 | OG0010074 | Get ORF Coding potential... Type: noncoding Potential: -0.730 Folding energies... MFEI: -29.199 AMFE: -0.690 GC content %: 42.298 | |
| Atauschii_AET5Gv20669200.2 AET5Gv20669200.2 |
High | No | 612 | OG0010074 | Get ORF Coding potential... Type: noncoding Potential: -0.914 Folding energies... MFEI: -26.405 AMFE: -0.652 GC content %: 40.523 | |
| Atauschii_AET5Gv20669200.3 AET5Gv20669200.3 |
High | No | 2594 | OG0010074 | Get ORF Coding potential... Type: noncoding Potential: -0.709 Folding energies... MFEI: -28.948 AMFE: -0.689 GC content %: 42.020 | |
| Atauschii_AET5Gv20669200.4 AET5Gv20669200.4 |
High | No | 1512 | OG0076991 | Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -27.917 AMFE: -0.661 GC content %: 42.262 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
