Atauschii AET5Gv20670800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20670800 [ AET5Gv20670800] |
5D | 400692965 | 400696207 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20670800.1 AET5Gv20670800.1 |
Low | No | 3063 | OG0001315 | Get ORF Coding potential... Type: noncoding Potential: -0.200 Folding energies... MFEI: -29.762 AMFE: -0.669 GC content %: 44.466 | |
| Atauschii_AET5Gv20670800.10 AET5Gv20670800.10 |
Low | No | 897 | OG0001315 | Get ORF Coding potential... Type: noncoding Potential: -0.373 Folding energies... MFEI: -33.043 AMFE: -0.640 GC content %: 51.616 | |
| Atauschii_AET5Gv20670800.12 AET5Gv20670800.12 |
Low | No | 2664 | OG0001315 | Get ORF Coding potential... Type: noncoding Potential: -0.378 Folding energies... MFEI: -28.799 AMFE: -0.653 GC content %: 44.069 | |
| Atauschii_AET5Gv20670800.16 AET5Gv20670800.16 |
Low | No | 1856 | OG0001315 | Get ORF Coding potential... Type: noncoding Potential: -0.164 Folding energies... MFEI: -30.361 AMFE: -0.652 GC content %: 46.552 | |
| Atauschii_AET5Gv20670800.2 AET5Gv20670800.2 |
Low | No | 1759 | OG0001315 | Get ORF Coding potential... Type: noncoding Potential: -0.279 Folding energies... MFEI: -29.397 AMFE: -0.625 GC content %: 47.015 | |
| Atauschii_AET5Gv20670800.20 AET5Gv20670800.20 |
Low | No | 2133 | OG0001315 | Get ORF Coding potential... Type: noncoding Potential: -0.314 Folding energies... MFEI: -29.550 AMFE: -0.635 GC content %: 46.554 | |
| Atauschii_AET5Gv20670800.21 AET5Gv20670800.21 |
Low | No | 688 | OG0001315 | Get ORF Coding potential... Type: noncoding Potential: -0.180 Folding energies... MFEI: -26.802 AMFE: -0.609 GC content %: 44.041 | |
| Atauschii_AET5Gv20670800.23 AET5Gv20670800.23 |
Low | No | 1034 | OG0001315 | Get ORF Coding potential... Type: noncoding Potential: -0.240 Folding energies... MFEI: -33.172 AMFE: -0.628 GC content %: 52.805 | |
| Atauschii_AET5Gv20670800.26 AET5Gv20670800.26 |
Low | No | 2509 | OG0001315 | Get ORF Coding potential... Type: noncoding Potential: -0.189 Folding energies... MFEI: -28.709 AMFE: -0.650 GC content %: 44.201 | |
| Atauschii_AET5Gv20670800.3 AET5Gv20670800.3 |
Low | No | 1868 | OG0001315 | Get ORF Coding potential... Type: noncoding Potential: -0.026 Folding energies... MFEI: -29.679 AMFE: -0.637 GC content %: 46.574 | |
| Atauschii_AET5Gv20670800.5 AET5Gv20670800.5 |
Low | No | 1766 | OG0001315 | Get ORF Coding potential... Type: noncoding Potential: -0.303 Folding energies... MFEI: -29.604 AMFE: -0.629 GC content %: 47.055 | |
| Atauschii_AET5Gv20670800.9 AET5Gv20670800.9 |
Low | No | 1085 | OG0001315 | Get ORF Coding potential... Type: noncoding Potential: -0.130 Folding energies... MFEI: -32.599 AMFE: -0.619 GC content %: 52.627 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20670800.5 | SwissProt | 2021-04-01 | Q9SD20 | 1.09e-16 |
| Atauschii_AET5Gv20670800.20 | SwissProt | 2021-04-01 | Q9SD20 | 1.37e-16 |
| Atauschii_AET5Gv20670800.1 | SwissProt | 2021-04-01 | Q9SD20 | 9.53e-16 |
| Atauschii_AET5Gv20670800.9 | SwissProt | 2021-04-01 | Q9SD20 | 5.89e-17 |
| Atauschii_AET5Gv20670800.21 | SwissProt | 2021-04-01 | Q9SD20 | 2.89e-17 |
| Atauschii_AET5Gv20670800.10 | SwissProt | 2021-04-01 | Q9SD20 | 4.28e-17 |
| Atauschii_AET5Gv20670800.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/Ginger; DNA/Sola; LTR/Gypsy; Simple_repeat | |
| Atauschii_AET5Gv20670800.23 | SwissProt | 2021-04-01 | Q9SD20 | 5.48e-17 |
| Atauschii_AET5Gv20670800.12 | SwissProt | 2021-04-01 | Q9SD20 | 8.17e-16 |
| Atauschii_AET5Gv20670800.26 | SwissProt | 2021-04-01 | Q9SD20 | 6.22e-16 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
