GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv20673100 [ AET5Gv20673100]	5D	401248253	401627184	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv20673100.4 AET5Gv20673100.4	High	No	322	OG0076999		Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -33.665 AMFE: -0.627 GC content %: 53.727
Atauschii_AET5Gv20673100.5 AET5Gv20673100.5	High	No	402	OG0025642		Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -49.179 AMFE: -0.694 GC content %: 70.896
Atauschii_AET5Gv20673100.6 AET5Gv20673100.6	High	No	232	OG0077000		Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -41.552 AMFE: -0.634 GC content %: 65.517

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).