GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv20677200 [ AET5Gv20677200]	5D	402827424	403033567	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv20677200.16 AET5Gv20677200.16	High	No	572	OG0077007		Get ORF Coding potential... Type: noncoding Potential: -0.701 Folding energies... MFEI: -27.010 AMFE: -0.638 GC content %: 42.308
Atauschii_AET5Gv20677200.21 AET5Gv20677200.21	Low	No	355	OG0077008		Get ORF Coding potential... Type: noncoding Potential: -0.865 Folding energies... MFEI: -25.239 AMFE: -0.593 GC content %: 42.535
Atauschii_AET5Gv20677200.22 AET5Gv20677200.22	High	No	243	OG0009836		Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -25.350 AMFE: -0.570 GC content %: 44.444
Atauschii_AET5Gv20677200.5 AET5Gv20677200.5	High	No	204	OG0077009		Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -21.863 AMFE: -0.519 GC content %: 42.157

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET5Gv20677200.21	SwissProt	2021-04-01	Q8BV79	1.88e-7

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).