Atauschii AET5Gv20690000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20690000 [ AET5Gv20690000] |
5D | 407136772 | 407147660 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20690000.11 AET5Gv20690000.11 |
High | No | 1684 | OG0010076 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -30.730 AMFE: -0.640 GC content %: 47.981 | |
| Atauschii_AET5Gv20690000.12 AET5Gv20690000.12 |
High | No | 1590 | OG0077039 | Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -27.635 AMFE: -0.605 GC content %: 45.660 | |
| Atauschii_AET5Gv20690000.13 AET5Gv20690000.13 |
High | No | 1465 | OG0003776 | Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -27.474 AMFE: -0.597 GC content %: 46.007 | |
| Atauschii_AET5Gv20690000.18 AET5Gv20690000.18 |
Low | No | 5561 | OG0003776 | Get ORF Coding potential... Type: noncoding Potential: -0.304 Folding energies... MFEI: -24.924 AMFE: -0.629 GC content %: 39.651 | |
| Atauschii_AET5Gv20690000.19 AET5Gv20690000.19 |
Low | No | 5470 | OG0003776 | Get ORF Coding potential... Type: noncoding Potential: -0.304 Folding energies... MFEI: -24.839 AMFE: -0.627 GC content %: 39.598 | |
| Atauschii_AET5Gv20690000.20 AET5Gv20690000.20 |
Low | No | 5554 | OG0003776 | Get ORF Coding potential... Type: noncoding Potential: -0.269 Folding energies... MFEI: -24.872 AMFE: -0.628 GC content %: 39.629 | |
| Atauschii_AET5Gv20690000.21 AET5Gv20690000.21 |
Low | No | 4359 | OG0003776 | Get ORF Coding potential... Type: noncoding Potential: -0.288 Folding energies... MFEI: -24.203 AMFE: -0.634 GC content %: 38.197 | |
| Atauschii_AET5Gv20690000.22 AET5Gv20690000.22 |
Low | No | 5604 | OG0003776 | Get ORF Coding potential... Type: noncoding Potential: -0.305 Folding energies... MFEI: -25.171 AMFE: -0.634 GC content %: 39.722 | |
| Atauschii_AET5Gv20690000.23 AET5Gv20690000.23 |
Low | No | 3774 | OG0003776 | Get ORF Coding potential... Type: noncoding Potential: -0.231 Folding energies... MFEI: -26.108 AMFE: -0.627 GC content %: 41.653 | |
| Atauschii_AET5Gv20690000.24 AET5Gv20690000.24 |
High | No | 1617 | OG0010076 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -26.741 AMFE: -0.607 GC content %: 44.032 | |
| Atauschii_AET5Gv20690000.25 AET5Gv20690000.25 |
High | No | 1885 | OG0077040 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -27.003 AMFE: -0.623 GC content %: 43.342 | |
| Atauschii_AET5Gv20690000.26 AET5Gv20690000.26 |
High | No | 1525 | OG0077041 | Get ORF Coding potential... Type: noncoding Potential: -0.937 Folding energies... MFEI: -26.938 AMFE: -0.602 GC content %: 44.721 | |
| Atauschii_AET5Gv20690000.27 AET5Gv20690000.27 |
High | No | 1731 | OG0077042 | Get ORF Coding potential... Type: noncoding Potential: -1.025 Folding energies... MFEI: -26.603 AMFE: -0.605 GC content %: 43.963 | |
| Atauschii_AET5Gv20690000.28 AET5Gv20690000.28 |
High | No | 1355 | OG0077043 | Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -26.996 AMFE: -0.601 GC content %: 44.945 | |
| Atauschii_AET5Gv20690000.29 AET5Gv20690000.29 |
High | No | 1381 | OG0010076 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -27.219 AMFE: -0.601 GC content %: 45.257 | |
| Atauschii_AET5Gv20690000.30 AET5Gv20690000.30 |
High | No | 1044 | OG0077044 | Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -24.444 AMFE: -0.538 GC content %: 45.402 | |
| Atauschii_AET5Gv20690000.31 AET5Gv20690000.31 |
High | No | 1414 | OG0077045 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -25.361 AMFE: -0.582 GC content %: 43.564 | |
| Atauschii_AET5Gv20690000.32 AET5Gv20690000.32 |
High | No | 1294 | OG0010076 | Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -25.858 AMFE: -0.587 GC content %: 44.049 | |
| Atauschii_AET5Gv20690000.33 AET5Gv20690000.33 |
High | No | 1070 | OG0000276 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -25.037 AMFE: -0.556 GC content %: 45.047 | |
| Atauschii_AET5Gv20690000.5 AET5Gv20690000.5 |
High | No | 286 | OG0077046 | Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -42.867 AMFE: -0.639 GC content %: 67.133 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20690000.21 | SwissProt | 2021-04-01 | Q9SXZ2 | 2.95e-14 |
| Atauschii_AET5Gv20690000.22 | SwissProt | 2021-04-01 | Q9SXZ2 | 3.87e-14 |
| Atauschii_AET5Gv20690000.23 | SwissProt | 2021-04-01 | Q9SXZ2 | 2.52e-14 |
| Atauschii_AET5Gv20690000.18 | SwissProt | 2021-04-01 | Q9SXZ2 | 3.83e-14 |
| Atauschii_AET5Gv20690000.19 | SwissProt | 2021-04-01 | Q9SXZ2 | 3.76e-14 |
| Atauschii_AET5Gv20690000.20 | SwissProt | 2021-04-01 | Q9SXZ2 | 3.83e-14 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
