Atauschii AET5Gv20690800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20690800 [ AET5Gv20690800] |
5D | 407229275 | 407234236 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20690800.12 AET5Gv20690800.12 |
Low | No | 2122 | OG0002934 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -29.651 AMFE: -0.614 GC content %: 48.256 | |
| Atauschii_AET5Gv20690800.13 AET5Gv20690800.13 |
Low | No | 2089 | OG0002934 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -29.976 AMFE: -0.618 GC content %: 48.492 | |
| Atauschii_AET5Gv20690800.14 AET5Gv20690800.14 |
Low | No | 1630 | OG0002934 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -27.252 AMFE: -0.631 GC content %: 43.190 | |
| Atauschii_AET5Gv20690800.16 AET5Gv20690800.16 |
Low | No | 813 | OG0002934 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -26.421 AMFE: -0.497 GC content %: 53.137 | |
| Atauschii_AET5Gv20690800.17 AET5Gv20690800.17 |
Low | No | 2210 | OG0002934 | Get ORF Coding potential... Type: noncoding Potential: -1.255 Folding energies... MFEI: -27.511 AMFE: -0.593 GC content %: 46.380 | |
| Atauschii_AET5Gv20690800.18 AET5Gv20690800.18 |
High | No | 651 | OG0002934 | Get ORF Coding potential... Type: noncoding Potential: -1.225 Folding energies... MFEI: -29.754 AMFE: -0.555 GC content %: 53.610 | |
| Atauschii_AET5Gv20690800.19 AET5Gv20690800.19 |
High | No | 483 | OG0077047 | Get ORF Coding potential... Type: noncoding Potential: -1.231 Folding energies... MFEI: -22.298 AMFE: -0.570 GC content %: 39.130 | |
| Atauschii_AET5Gv20690800.20 AET5Gv20690800.20 |
Low | No | 622 | OG0002934 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -31.302 AMFE: -0.555 GC content %: 56.431 | |
| Atauschii_AET5Gv20690800.21 AET5Gv20690800.21 |
Low | No | 559 | OG0002934 | Get ORF Coding potential... Type: noncoding Potential: -0.964 Folding energies... MFEI: -32.504 AMFE: -0.552 GC content %: 58.855 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20690800.14 | SwissProt | 2021-04-01 | Q8LBW2 | 7.31e-10 |
| Atauschii_AET5Gv20690800.16 | SwissProt | 2021-04-01 | Q8LBW2 | 6.57e-9 |
| Atauschii_AET5Gv20690800.17 | SwissProt | 2021-04-01 | Q8LBW2 | 1.32e-8 |
| Atauschii_AET5Gv20690800.20 | SwissProt | 2021-04-01 | Q8LBW2 | 2.24e-8 |
| Atauschii_AET5Gv20690800.12 | SwissProt | 2021-04-01 | Q9SGA5 | 1.5e-9 |
| Atauschii_AET5Gv20690800.21 | SwissProt | 2021-04-01 | Q8LBW2 | 3.55e-9 |
| Atauschii_AET5Gv20690800.13 | SwissProt | 2021-04-01 | Q8LBW2 | 1.31e-8 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
