Atauschii AET5Gv20694800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20694800 [ AET5Gv20694800] |
5D | 410290659 | 410303692 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20694800.1 AET5Gv20694800.1 |
High | No | 1419 | OG0002935 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -28.520 AMFE: -0.603 GC content %: 47.287 | |
| Atauschii_AET5Gv20694800.17 AET5Gv20694800.17 |
High | No | 888 | OG0025646 | Get ORF Coding potential... Type: noncoding Potential: -0.658 Folding energies... MFEI: -25.901 AMFE: -0.568 GC content %: 45.608 | |
| Atauschii_AET5Gv20694800.18 AET5Gv20694800.18 |
High | No | 638 | OG0025646 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -23.574 AMFE: -0.531 GC content %: 44.357 | |
| Atauschii_AET5Gv20694800.2 AET5Gv20694800.2 |
Low | No | 3101 | OG0002935 | Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -27.369 AMFE: -0.686 GC content %: 39.890 | |
| Atauschii_AET5Gv20694800.3 AET5Gv20694800.3 |
Low | No | 1885 | OG0002935 | Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -29.729 AMFE: -0.690 GC content %: 43.077 | |
| Atauschii_AET5Gv20694800.4 AET5Gv20694800.4 |
High | No | 2025 | OG0002935 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -27.047 AMFE: -0.614 GC content %: 44.049 | |
| Atauschii_AET5Gv20694800.5 AET5Gv20694800.5 |
Low | No | 3343 | OG0002935 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -27.095 AMFE: -0.695 GC content %: 39.007 | |
| Atauschii_AET5Gv20694800.7 AET5Gv20694800.7 |
High | No | 1199 | OG0002935 | Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -29.925 AMFE: -0.600 GC content %: 49.875 | |
| Atauschii_AET5Gv20694800.8 AET5Gv20694800.8 |
High | No | 1052 | OG0002935 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -30.371 AMFE: -0.592 GC content %: 51.331 | |
| Atauschii_AET5Gv20694800.9 AET5Gv20694800.9 |
Low | No | 1954 | OG0002935 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -29.662 AMFE: -0.700 GC content %: 42.375 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20694800.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET5Gv20694800.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET5Gv20694800.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET5Gv20694800.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
