Atauschii AET5Gv20696900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20696900 [ AET5Gv20696900] |
5D | 411575794 | 411578168 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20696900.1 AET5Gv20696900.1 |
Low | No | 1999 | OG0003777 | Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -30.040 AMFE: -0.689 GC content %: 43.622 | |
| Atauschii_AET5Gv20696900.10 AET5Gv20696900.10 |
High | No | 1070 | OG0003777 | Get ORF Coding potential... Type: noncoding Potential: -0.709 Folding energies... MFEI: -27.000 AMFE: -0.617 GC content %: 43.738 | |
| Atauschii_AET5Gv20696900.11 AET5Gv20696900.11 |
High | No | 1252 | OG0003777 | Get ORF Coding potential... Type: noncoding Potential: -0.738 Folding energies... MFEI: -26.805 AMFE: -0.636 GC content %: 42.173 | |
| Atauschii_AET5Gv20696900.14 AET5Gv20696900.14 |
High | No | 246 | OG0025648 | Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -20.610 AMFE: -0.478 GC content %: 43.089 | |
| Atauschii_AET5Gv20696900.15 AET5Gv20696900.15 |
High | No | 240 | OG0025648 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -19.792 AMFE: -0.461 GC content %: 42.917 | |
| Atauschii_AET5Gv20696900.2 AET5Gv20696900.2 |
Low | No | 1855 | OG0003777 | Get ORF Coding potential... Type: noncoding Potential: -0.796 Folding energies... MFEI: -30.199 AMFE: -0.679 GC content %: 44.474 | |
| Atauschii_AET5Gv20696900.5 AET5Gv20696900.5 |
Low | No | 1929 | OG0003777 | Get ORF Coding potential... Type: noncoding Potential: -0.663 Folding energies... MFEI: -29.881 AMFE: -0.682 GC content %: 43.805 | |
| Atauschii_AET5Gv20696900.6 AET5Gv20696900.6 |
Low | No | 1253 | OG0003777 | Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -28.188 AMFE: -0.641 GC content %: 43.974 | |
| Atauschii_AET5Gv20696900.7 AET5Gv20696900.7 |
Low | No | 1353 | OG0003777 | Get ORF Coding potential... Type: noncoding Potential: -0.826 Folding energies... MFEI: -28.751 AMFE: -0.640 GC content %: 44.937 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20696900.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20696900.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20696900.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20696900.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET5Gv20696900.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
