Atauschii AET5Gv20704000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20704000 [ AET5Gv20704000] |
5D | 414078006 | 414089500 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20704000.1 AET5Gv20704000.1 |
High | No | 1508 | OG0001587 | Get ORF Coding potential... Type: noncoding Potential: -0.224 Folding energies... MFEI: -32.347 AMFE: -0.620 GC content %: 52.188 | |
| Atauschii_AET5Gv20704000.10 AET5Gv20704000.10 |
High | No | 2011 | OG0001587 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -29.368 AMFE: -0.631 GC content %: 46.544 | |
| Atauschii_AET5Gv20704000.11 AET5Gv20704000.11 |
High | No | 2286 | OG0001587 | Get ORF Coding potential... Type: noncoding Potential: -1.011 Folding energies... MFEI: -28.399 AMFE: -0.632 GC content %: 44.969 | |
| Atauschii_AET5Gv20704000.2 AET5Gv20704000.2 |
High | No | 1792 | OG0001587 | Get ORF Coding potential... Type: noncoding Potential: -0.242 Folding energies... MFEI: -33.292 AMFE: -0.651 GC content %: 51.172 | |
| Atauschii_AET5Gv20704000.3 AET5Gv20704000.3 |
High | No | 2579 | OG0001587 | Get ORF Coding potential... Type: noncoding Potential: -0.275 Folding energies... MFEI: -30.345 AMFE: -0.642 GC content %: 47.266 | |
| Atauschii_AET5Gv20704000.4 AET5Gv20704000.4 |
High | No | 1963 | OG0001587 | Get ORF Coding potential... Type: noncoding Potential: -0.251 Folding energies... MFEI: -32.435 AMFE: -0.651 GC content %: 49.822 | |
| Atauschii_AET5Gv20704000.5 AET5Gv20704000.5 |
High | No | 1467 | OG0001587 | Get ORF Coding potential... Type: noncoding Potential: -0.236 Folding energies... MFEI: -28.569 AMFE: -0.602 GC content %: 47.444 | |
| Atauschii_AET5Gv20704000.6 AET5Gv20704000.6 |
High | No | 2849 | OG0001587 | Get ORF Coding potential... Type: noncoding Potential: -0.282 Folding energies... MFEI: -28.673 AMFE: -0.629 GC content %: 45.595 | |
| Atauschii_AET5Gv20704000.7 AET5Gv20704000.7 |
High | No | 2423 | OG0001587 | Get ORF Coding potential... Type: noncoding Potential: -0.270 Folding energies... MFEI: -29.864 AMFE: -0.634 GC content %: 47.090 | |
| Atauschii_AET5Gv20704000.8 AET5Gv20704000.8 |
High | No | 1546 | OG0001587 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -31.818 AMFE: -0.646 GC content %: 49.224 | |
| Atauschii_AET5Gv20704000.9 AET5Gv20704000.9 |
High | No | 1934 | OG0001587 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -30.160 AMFE: -0.642 GC content %: 46.949 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
