GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv20706600 [ AET5Gv20706600]	5D	414988597	414989120	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv20706600.2 AET5Gv20706600.2	High	No	291	OG0000244		Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -31.512 AMFE: -0.615 GC content %: 51.203
Atauschii_AET5Gv20706600.3 AET5Gv20706600.3	High	No	284	OG0000610		Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -28.451 AMFE: -0.641 GC content %: 44.366

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).