Atauschii AET5Gv20736900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20736900 [ AET5Gv20736900] |
5D | 426803052 | 426807166 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20736900.1 AET5Gv20736900.1 |
Low | No | 2121 | OG0001916 | Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -24.366 AMFE: -0.635 GC content %: 38.378 | |
| Atauschii_AET5Gv20736900.15 AET5Gv20736900.15 |
High | No | 1360 | OG0001916 | Get ORF Coding potential... Type: noncoding Potential: -0.741 Folding energies... MFEI: -24.963 AMFE: -0.612 GC content %: 40.809 | |
| Atauschii_AET5Gv20736900.2 AET5Gv20736900.2 |
High | No | 1908 | OG0001916 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -25.314 AMFE: -0.648 GC content %: 39.046 | |
| Atauschii_AET5Gv20736900.25 AET5Gv20736900.25 |
Low | No | 2467 | OG0001916 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -25.480 AMFE: -0.660 GC content %: 38.589 | |
| Atauschii_AET5Gv20736900.26 AET5Gv20736900.26 |
Low | No | 2428 | OG0001916 | Get ORF Coding potential... Type: noncoding Potential: -1.027 Folding energies... MFEI: -25.189 AMFE: -0.657 GC content %: 38.344 | |
| Atauschii_AET5Gv20736900.29 AET5Gv20736900.29 |
High | No | 763 | OG0001916 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -25.452 AMFE: -0.637 GC content %: 39.974 | |
| Atauschii_AET5Gv20736900.32 AET5Gv20736900.32 |
High | No | 1447 | OG0001916 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -25.183 AMFE: -0.651 GC content %: 38.701 | |
| Atauschii_AET5Gv20736900.43 AET5Gv20736900.43 |
Low | No | 1954 | OG0001916 | Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -24.918 AMFE: -0.639 GC content %: 38.997 | |
| Atauschii_AET5Gv20736900.46 AET5Gv20736900.46 |
Low | No | 1622 | OG0001916 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -24.581 AMFE: -0.634 GC content %: 38.779 | |
| Atauschii_AET5Gv20736900.49 AET5Gv20736900.49 |
High | No | 799 | OG0001916 | Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -23.680 AMFE: -0.637 GC content %: 37.171 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20736900.1 | SwissProt | 2021-04-01 | Q852L0 | 4.0e-7 |
| Atauschii_AET5Gv20736900.25 | SwissProt | 2021-04-01 | Q852L0 | 4.96e-7 |
| Atauschii_AET5Gv20736900.26 | SwissProt | 2021-04-01 | Q852L0 | 4.85e-7 |
| Atauschii_AET5Gv20736900.43 | SwissProt | 2021-04-01 | Q852L0 | 3.54e-7 |
| Atauschii_AET5Gv20736900.46 | SwissProt | 2021-04-01 | Q852L0 | 2.62e-7 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
