Atauschii AET5Gv20737800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20737800 [ AET5Gv20737800] |
5D | 427479292 | 427567278 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20737800.10 AET5Gv20737800.10 |
Low | No | 450 | OG0003778 | Get ORF Coding potential... Type: noncoding Potential: -0.264 Folding energies... MFEI: -33.956 AMFE: -0.626 GC content %: 54.222 | |
| Atauschii_AET5Gv20737800.12 AET5Gv20737800.12 |
Low | No | 1403 | OG0016520 | Get ORF Coding potential... Type: noncoding Potential: -1.085 Folding energies... MFEI: -33.927 AMFE: -0.600 GC content %: 56.522 | |
| Atauschii_AET5Gv20737800.13 AET5Gv20737800.13 |
High | No | 961 | OG0016520 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -37.034 AMFE: -0.582 GC content %: 63.684 | |
| Atauschii_AET5Gv20737800.14 AET5Gv20737800.14 |
High | No | 723 | OG0016520 | Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -32.960 AMFE: -0.499 GC content %: 66.113 | |
| Atauschii_AET5Gv20737800.3 AET5Gv20737800.3 |
Low | No | 792 | OG0003778 | Get ORF Coding potential... Type: noncoding Potential: -1.266 Folding energies... MFEI: -29.520 AMFE: -0.639 GC content %: 46.212 | |
| Atauschii_AET5Gv20737800.4 AET5Gv20737800.4 |
Low | No | 820 | OG0003778 | Get ORF Coding potential... Type: noncoding Potential: -1.270 Folding energies... MFEI: -31.232 AMFE: -0.648 GC content %: 48.171 | |
| Atauschii_AET5Gv20737800.5 AET5Gv20737800.5 |
Low | No | 667 | OG0003778 | Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -27.781 AMFE: -0.608 GC content %: 45.727 | |
| Atauschii_AET5Gv20737800.6 AET5Gv20737800.6 |
Low | No | 757 | OG0003778 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -31.202 AMFE: -0.644 GC content %: 48.481 | |
| Atauschii_AET5Gv20737800.7 AET5Gv20737800.7 |
Low | No | 808 | OG0003778 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -32.228 AMFE: -0.656 GC content %: 49.134 | |
| Atauschii_AET5Gv20737800.9 AET5Gv20737800.9 |
Low | No | 751 | OG0003778 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -31.784 AMFE: -0.649 GC content %: 49.001 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20737800.5 | SwissProt | 2021-04-01 | Q9LFQ0 | 7.46e-10 |
| Atauschii_AET5Gv20737800.6 | SwissProt | 2021-04-01 | Q9M2A0 | 1.4e-10 |
| Atauschii_AET5Gv20737800.10 | SwissProt | 2021-04-01 | Q9M2A0 | 4.41e-11 |
| Atauschii_AET5Gv20737800.7 | SwissProt | 2021-04-01 | Q9M2A0 | 2.49e-10 |
| Atauschii_AET5Gv20737800.12 | SwissProt | 2021-04-01 | Q9LFQ0 | 1.76e-7 |
| Atauschii_AET5Gv20737800.9 | SwissProt | 2021-04-01 | Q9M2A0 | 6.52e-10 |
| Atauschii_AET5Gv20737800.3 | SwissProt | 2021-04-01 | Q9M2A0 | 3.1e-10 |
| Atauschii_AET5Gv20737800.4 | SwissProt | 2021-04-01 | Q9M2A0 | 2.1e-10 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
