Atauschii AET5Gv20767900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20767900 [ AET5Gv20767900] |
5D | 436567982 | 436570448 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20767900.4 AET5Gv20767900.4 |
High | No | 1056 | OG0077168 | Get ORF Coding potential... Type: noncoding Potential: -0.765 Folding energies... MFEI: -29.621 AMFE: -0.589 GC content %: 50.284 | |
| Atauschii_AET5Gv20767900.5 AET5Gv20767900.5 |
High | No | 659 | OG0000361 | Get ORF Coding potential... Type: noncoding Potential: -0.389 Folding energies... MFEI: -25.129 AMFE: -0.571 GC content %: 44.006 | |
| Atauschii_AET5Gv20767900.6 AET5Gv20767900.6 |
High | No | 520 | OG0000361 | Get ORF Coding potential... Type: noncoding Potential: -0.358 Folding energies... MFEI: -25.096 AMFE: -0.541 GC content %: 46.346 | |
| Atauschii_AET5Gv20767900.7 AET5Gv20767900.7 |
High | No | 490 | OG0000361 | Get ORF Coding potential... Type: noncoding Potential: -0.355 Folding energies... MFEI: -24.673 AMFE: -0.537 GC content %: 45.918 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
