Atauschii AET5Gv20805500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20805500 [ AET5Gv20805500] |
5D | 445387617 | 445402245 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20805500.5 AET5Gv20805500.5 |
High | No | 443 | OG0077230 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -28.172 AMFE: -0.570 GC content %: 49.436 | |
| Atauschii_AET5Gv20805500.6 AET5Gv20805500.6 |
High | No | 890 | OG0077231 | Get ORF Coding potential... Type: noncoding Potential: -1.366 Folding energies... MFEI: -23.270 AMFE: -0.527 GC content %: 44.157 | |
| Atauschii_AET5Gv20805500.7 AET5Gv20805500.7 |
High | No | 1541 | OG0025666 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -24.847 AMFE: -0.578 GC content %: 42.959 | |
| Atauschii_AET5Gv20805500.8 AET5Gv20805500.8 |
High | No | 1757 | OG0025666 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -25.668 AMFE: -0.614 GC content %: 41.833 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
