GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv20805700 [ AET5Gv20805700]	5D	445404894	445525445	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv20805700.3 AET5Gv20805700.3	High	No	806	OG0077232		Get ORF Coding potential... Type: noncoding Potential: -0.390 Folding energies... MFEI: -29.628 AMFE: -0.647 GC content %: 45.782
Atauschii_AET5Gv20805700.4 AET5Gv20805700.4	High	No	378	OG0077233		Get ORF Coding potential... Type: noncoding Potential: -0.614 Folding energies... MFEI: -26.455 AMFE: -0.559 GC content %: 47.354
Atauschii_AET5Gv20805700.5 AET5Gv20805700.5	High	No	371	OG0077234		Get ORF Coding potential... Type: noncoding Potential: -0.798 Folding energies... MFEI: -26.388 AMFE: -0.541 GC content %: 48.787

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).