Atauschii AET5Gv20825900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20825900 [ AET5Gv20825900] |
5D | 449308597 | 449314461 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20825900.1 AET5Gv20825900.1 |
High | No | 673 | OG0007008 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -27.489 AMFE: -0.723 GC content %: 38.039 | |
| Atauschii_AET5Gv20825900.10 AET5Gv20825900.10 |
High | No | 1609 | OG0007008 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -30.168 AMFE: -0.670 GC content %: 44.997 | |
| Atauschii_AET5Gv20825900.11 AET5Gv20825900.11 |
High | No | 986 | OG0007008 | Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -31.542 AMFE: -0.669 GC content %: 47.160 | |
| Atauschii_AET5Gv20825900.12 AET5Gv20825900.12 |
High | No | 1016 | OG0007008 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -28.238 AMFE: -0.693 GC content %: 40.748 | |
| Atauschii_AET5Gv20825900.15 AET5Gv20825900.15 |
High | No | 292 | OG0007008 | Get ORF Coding potential... Type: noncoding Potential: -0.783 Folding energies... MFEI: -30.514 AMFE: -0.498 GC content %: 61.301 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
