Atauschii AET5Gv20885900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20885900 [ AET5Gv20885900] |
5D | 467428776 | 467434659 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20885900.10 AET5Gv20885900.10 |
High | No | 1445 | OG0025689 | Get ORF Coding potential... Type: noncoding Potential: -0.515 Folding energies... MFEI: -32.055 AMFE: -0.616 GC content %: 52.042 | |
| Atauschii_AET5Gv20885900.11 AET5Gv20885900.11 |
High | No | 452 | OG0077357 | Get ORF Coding potential... Type: noncoding Potential: -0.894 Folding energies... MFEI: -24.779 AMFE: -0.538 GC content %: 46.018 | |
| Atauschii_AET5Gv20885900.12 AET5Gv20885900.12 |
High | No | 553 | OG0077358 | Get ORF Coding potential... Type: noncoding Potential: -0.838 Folding energies... MFEI: -21.754 AMFE: -0.519 GC content %: 41.953 | |
| Atauschii_AET5Gv20885900.7 AET5Gv20885900.7 |
High | No | 1059 | OG0025689 | Get ORF Coding potential... Type: noncoding Potential: -0.443 Folding energies... MFEI: -34.051 AMFE: -0.615 GC content %: 55.335 | |
| Atauschii_AET5Gv20885900.9 AET5Gv20885900.9 |
High | No | 1067 | OG0077359 | Get ORF Coding potential... Type: noncoding Potential: -0.444 Folding energies... MFEI: -32.202 AMFE: -0.597 GC content %: 53.983 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
