Atauschii AET5Gv20898500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20898500 [ AET5Gv20898500] |
5D | 471765569 | 471772297 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv20898500.1 AET5Gv20898500.1 |
High | No | 272 | OG0077379 | Get ORF Coding potential... Type: noncoding Potential: -0.528 Folding energies... MFEI: -40.625 AMFE: -0.576 GC content %: 70.588 | |
| Atauschii_AET5Gv20898500.12 AET5Gv20898500.12 |
Low | No | 2139 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.197 Folding energies... MFEI: -30.734 AMFE: -0.674 GC content %: 45.629 | |
| Atauschii_AET5Gv20898500.17 AET5Gv20898500.17 |
Low | No | 2660 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.213 Folding energies... MFEI: -30.583 AMFE: -0.668 GC content %: 45.752 | |
| Atauschii_AET5Gv20898500.18 AET5Gv20898500.18 |
Low | No | 1392 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.154 Folding energies... MFEI: -31.243 AMFE: -0.651 GC content %: 47.989 | |
| Atauschii_AET5Gv20898500.20 AET5Gv20898500.20 |
Low | No | 2644 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.193 Folding energies... MFEI: -30.809 AMFE: -0.674 GC content %: 45.726 | |
| Atauschii_AET5Gv20898500.21 AET5Gv20898500.21 |
Low | No | 2553 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.073 Folding energies... MFEI: -31.167 AMFE: -0.673 GC content %: 46.298 | |
| Atauschii_AET5Gv20898500.24 AET5Gv20898500.24 |
Low | No | 2843 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.119 Folding energies... MFEI: -30.376 AMFE: -0.673 GC content %: 45.164 | |
| Atauschii_AET5Gv20898500.33 AET5Gv20898500.33 |
Low | No | 2386 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.206 Folding energies... MFEI: -30.415 AMFE: -0.664 GC content %: 45.809 | |
| Atauschii_AET5Gv20898500.35 AET5Gv20898500.35 |
Low | No | 1721 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.154 Folding energies... MFEI: -31.470 AMFE: -0.670 GC content %: 46.949 | |
| Atauschii_AET5Gv20898500.36 AET5Gv20898500.36 |
Low | No | 1789 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.060 Folding energies... MFEI: -31.319 AMFE: -0.673 GC content %: 46.506 | |
| Atauschii_AET5Gv20898500.37 AET5Gv20898500.37 |
Low | No | 2210 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.207 Folding energies... MFEI: -29.412 AMFE: -0.669 GC content %: 43.937 | |
| Atauschii_AET5Gv20898500.38 AET5Gv20898500.38 |
Low | No | 2227 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.247 Folding energies... MFEI: -29.264 AMFE: -0.667 GC content %: 43.871 | |
| Atauschii_AET5Gv20898500.41 AET5Gv20898500.41 |
Low | No | 3002 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.208 Folding energies... MFEI: -28.401 AMFE: -0.664 GC content %: 42.771 | |
| Atauschii_AET5Gv20898500.44 AET5Gv20898500.44 |
Low | No | 2838 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.119 Folding energies... MFEI: -28.936 AMFE: -0.659 GC content %: 43.904 | |
| Atauschii_AET5Gv20898500.45 AET5Gv20898500.45 |
Low | No | 3091 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.102 Folding energies... MFEI: -28.402 AMFE: -0.661 GC content %: 42.963 | |
| Atauschii_AET5Gv20898500.46 AET5Gv20898500.46 |
High | No | 1561 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -1.376 Folding energies... MFEI: -29.007 AMFE: -0.653 GC content %: 44.395 | |
| Atauschii_AET5Gv20898500.49 AET5Gv20898500.49 |
Low | No | 1845 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.168 Folding energies... MFEI: -30.401 AMFE: -0.670 GC content %: 45.366 | |
| Atauschii_AET5Gv20898500.52 AET5Gv20898500.52 |
Low | No | 1435 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.142 Folding energies... MFEI: -28.334 AMFE: -0.624 GC content %: 45.436 | |
| Atauschii_AET5Gv20898500.54 AET5Gv20898500.54 |
Low | No | 2790 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.270 Folding energies... MFEI: -28.183 AMFE: -0.653 GC content %: 43.190 | |
| Atauschii_AET5Gv20898500.55 AET5Gv20898500.55 |
Low | No | 2578 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.217 Folding energies... MFEI: -28.856 AMFE: -0.655 GC content %: 44.026 | |
| Atauschii_AET5Gv20898500.56 AET5Gv20898500.56 |
Low | No | 2467 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.215 Folding energies... MFEI: -28.934 AMFE: -0.660 GC content %: 43.859 | |
| Atauschii_AET5Gv20898500.57 AET5Gv20898500.57 |
Low | No | 2245 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.185 Folding energies... MFEI: -29.047 AMFE: -0.659 GC content %: 44.098 | |
| Atauschii_AET5Gv20898500.62 AET5Gv20898500.62 |
Low | No | 964 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.339 Folding energies... MFEI: -26.878 AMFE: -0.617 GC content %: 43.568 | |
| Atauschii_AET5Gv20898500.63 AET5Gv20898500.63 |
High | No | 831 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -21.300 AMFE: -0.596 GC content %: 35.740 | |
| Atauschii_AET5Gv20898500.8 AET5Gv20898500.8 |
Low | No | 1889 | OG0000295 | Get ORF Coding potential... Type: noncoding Potential: -0.187 Folding energies... MFEI: -31.588 AMFE: -0.672 GC content %: 47.009 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv20898500.33 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET5Gv20898500.44 | SwissProt | 2021-04-01 | Q8RW96 | 9.9e-24 |
| Atauschii_AET5Gv20898500.17 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET5Gv20898500.55 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET5Gv20898500.35 | SwissProt | 2021-04-01 | Q8RW96 | 1.13e-24 |
| Atauschii_AET5Gv20898500.56 | SwissProt | 2021-04-01 | Q8RW96 | 2.78e-24 |
| Atauschii_AET5Gv20898500.44 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET5Gv20898500.18 | SwissProt | 2021-04-01 | Q8RW96 | 4.35e-25 |
| Atauschii_AET5Gv20898500.35 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET5Gv20898500.45 | SwissProt | 2021-04-01 | Q8RW96 | 3.1e-24 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
